Organism : Clostridium acetobutylicum | Module List :
Superfamily II DNA/RNA helicase, SNF2 family (NCBI ptt file)
Functional Annotations (5)
|Superfamily II DNA/RNA helicases, SNF2 family||cog/ cog|
|DNA binding||go/ molecular_function|
|helicase activity||go/ molecular_function|
|ATP binding||go/ molecular_function|
|zinc ion binding||go/ molecular_function|
Regulation information for CAC2996(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2996
Module neighborhood information for CAC2996
|Gene||Common Name||Description||Module membership|
|CAC0201||CAC0201||Transcriptional regulators, AcrR family (NCBI ptt file)||157, 259|
|CAC0237||CAC0237||ABC transporter, permease component (NCBI ptt file)||106, 287|
|CAC0238||CAC0238||ABC transporter, permease component (NCBI ptt file)||259, 346|
|CAC0291||CAC0291||FUSION: methionine sintase I (cobalamin dependent) and 5,10 methylenetetrahydrofolate reductase (NCBI ptt file)||259, 287|
|CAC0360||CAC0360||Transcriptional regulator, LacI family (HTH lacI domain), B.subtilis degA ortholog (NCBI ptt file)||10, 259|
|CAC0371||CAC0371||Response regulator (CheY-like domain and HTH domain) (NCBI ptt file)||71, 287|
|CAC0389||CAC0389||Hypothetical protein (NCBI ptt file)||167, 259|
|CAC0418||CAC0418||Predicted phosphatase, HAD family (NCBI ptt file)||261, 287|
|CAC0421||CAC0421||Uncharacterized membrane protein (NCBI ptt file)||72, 259|
|CAC0487||CAC0487||Uncharacterized protein, ortholog of Thermotoga maritima (4981823) (NCBI ptt file)||247, 259|
|CAC0605||CAC0605||Predicted phosphatase (NCBI ptt file)||287, 356|
|CAC0607||CAC0607||Aspartyl aminopeptidase (NCBI ptt file)||287, 309|
|CAC1018||CAC1018||Predicted membrane protein (NCBI ptt file)||287, 326|
|CAC1046||CAC1046||Transcriptional regulator, LysR family (NCBI ptt file)||71, 287|
|CAC1273||CAC1273||Uncharacterized protein, YQEN B.subtilis homolog (NCBI ptt file)||146, 259|
|CAC1330||CAC1330||Metal-dependent hydrolases of the beta-lactamase superfamily, possible sulfatase (NCBI ptt file)||287, 356|
|CAC1340||araR||Transcriptional regulator of the LacI family (NCBI ptt file)||259, 261|
|CAC1424||CAC1424||Zn-dependent hydrolase, glyoxylase II family (NCBI ptt file)||287, 326|
|CAC1490||CAC1490||Hypothetical protein (NCBI ptt file)||185, 259|
|CAC1516||CAC1516||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||140, 287|
|CAC1581||CAC1581||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||185, 259|
|CAC1582||CAC1582||Membrane associated histidine kinase-like ATPase (NCBI ptt file)||259, 287|
|CAC1619||CAC1619||Hypothetical protein (NCBI ptt file)||71, 259|
|CAC1677||CAC1677||Predicted permease (NCBI ptt file)||259, 359|
|CAC1969||CAC1969||Possible plasmid transfer factor, TraK (NCBI ptt file)||287, 291|
|CAC2429||CAC2429||Predicted membrane protein (NCBI ptt file)||259, 261|
|CAC2472||CAC2472||Alpha/beta superfamily hydrolase (NCBI ptt file)||261, 287|
|CAC2710||etfB||Electron transfer flavoprotein beta-subunit (NCBI ptt file)||255, 259|
|CAC2735||CAC2735||Response regulator (CheY-like receiver domain and HTH-type DNA-binding) (NCBI ptt file)||74, 287|
|CAC2778||CAC2778||Rubredoxin (NCBI ptt file)||31, 259|
|CAC2779||CAC2779||Hypothetical protein (NCBI ptt file)||20, 259|
|CAC2780||CAC2780||Spore coat protein, cotF related (NCBI ptt file)||20, 259|
|CAC2996||CAC2996||Superfamily II DNA/RNA helicase, SNF2 family (NCBI ptt file)||259, 287|
|CAC3088||CAC3088||NtrC family transcriptional regulator, ATPase domain fused to two PAS domains (NCBI ptt file)||113, 287|
|CAC3457||CAC3457||Predicted membrane protein (NCBI ptt file)||287, 356|
|CAC3509||CAC3509||Transcriptional regulator, MerR family (duplicated domains) (NCBI ptt file)||287, 356|
|CAC3529||CAC3529||Hypothetical protein (NCBI ptt file)||71, 259|
|CAC3530||CAC3530||Hypothetical protein (NCBI ptt file)||71, 259|
|CAC3546||CAC3546||Highly conserved protein containing a domain related to cellulase catalitic domain and a thioredoxin domain (NCBI ptt file)||259, 300|
|CAC3587||CAC3587||DNA replication protein DnaD (NCBI ptt file)||13, 287|
|CAC3591||CAC3591||Acyl-ACP thioesterase (NCBI ptt file)||157, 259|
|CAC3601||CAC3601||Nudix (MutT) family hydrolase (NCBI ptt file)||62, 259|
|CAC3687||CAC3687||Transcriptional regulator, AcrR family (NCBI ptt file)||140, 259|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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