Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1490(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1490
|Gene||Common Name||Description||Module membership|
|CAC0055||CAC0055||Uncharacterized predicted metal-binding protein, ortholog of Streptomyces (2808777) (NCBI ptt file)||71, 185|
|CAC0160||CAC0160||Predicted acetyltransferase (NCBI ptt file)||185, 345|
|CAC0201||CAC0201||Transcriptional regulators, AcrR family (NCBI ptt file)||157, 259|
|CAC0238||CAC0238||ABC transporter, permease component (NCBI ptt file)||259, 346|
|CAC0239||CAC0239||Histidine kinase-like ATPase (NCBI ptt file)||185, 346|
|CAC0291||CAC0291||FUSION: methionine sintase I (cobalamin dependent) and 5,10 methylenetetrahydrofolate reductase (NCBI ptt file)||259, 287|
|CAC0360||CAC0360||Transcriptional regulator, LacI family (HTH lacI domain), B.subtilis degA ortholog (NCBI ptt file)||10, 259|
|CAC0389||CAC0389||Hypothetical protein (NCBI ptt file)||167, 259|
|CAC0417||CAC0417||Similar to arsenate reductase (NCBI ptt file)||71, 185|
|CAC0420||CAC0420||Conserved membrane protein, possible homolog of CAAX-like membrane endopeptidase (NCBI ptt file)||185, 247|
|CAC0421||CAC0421||Uncharacterized membrane protein (NCBI ptt file)||72, 259|
|CAC0487||CAC0487||Uncharacterized protein, ortholog of Thermotoga maritima (4981823) (NCBI ptt file)||247, 259|
|CAC0541||CAC0541||SAM-dependent methyltransferase (NCBI ptt file)||185, 223|
|CAC0597||gerKB||Spore germination protein, gerKB (NCBI ptt file)||115, 185|
|CAC0747||CAC0747||Secreted protein containing uncharacterized conserved protein of ErfK family (NCBI ptt file)||49, 185|
|CAC0851||CAC0851||Ortholog ygiD E.coli (NCBI ptt file)||167, 185|
|CAC0860||CAC0860||Two-component response regulator (NCBI ptt file)||185, 206|
|CAC1040||CAC1040||Predicted amidohydrolases (NCBI ptt file)||185, 346|
|CAC1083||CAC1083||Predicted membrane-associated metal-binding protein (NCBI ptt file)||185, 251|
|CAC1273||CAC1273||Uncharacterized protein, YQEN B.subtilis homolog (NCBI ptt file)||146, 259|
|CAC1340||araR||Transcriptional regulator of the LacI family (NCBI ptt file)||259, 261|
|CAC1490||CAC1490||Hypothetical protein (NCBI ptt file)||185, 259|
|CAC1491||CAC1491||Predicted ATPase (NCBI ptt file)||146, 185|
|CAC1557||CAC1557||Predicted acetyltransferase (NCBI ptt file)||1, 185|
|CAC1581||CAC1581||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||185, 259|
|CAC1582||CAC1582||Membrane associated histidine kinase-like ATPase (NCBI ptt file)||259, 287|
|CAC1619||CAC1619||Hypothetical protein (NCBI ptt file)||71, 259|
|CAC1670||CAC1670||Response regulator (CheY-like receiver domain and DNA-binding HTH domain) (NCBI ptt file)||185, 326|
|CAC1677||CAC1677||Predicted permease (NCBI ptt file)||259, 359|
|CAC1970||CAC1970||Hypothetical protein (NCBI ptt file)||185, 326|
|CAC2429||CAC2429||Predicted membrane protein (NCBI ptt file)||259, 261|
|CAC2546||CAC2546||Transcriptional regulator, FadR family (NCBI ptt file)||185, 276|
|CAC2710||etfB||Electron transfer flavoprotein beta-subunit (NCBI ptt file)||255, 259|
|CAC2759||CAC2759||Response regulator (CheY receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||71, 185|
|CAC2778||CAC2778||Rubredoxin (NCBI ptt file)||31, 259|
|CAC2779||CAC2779||Hypothetical protein (NCBI ptt file)||20, 259|
|CAC2780||CAC2780||Spore coat protein, cotF related (NCBI ptt file)||20, 259|
|CAC2996||CAC2996||Superfamily II DNA/RNA helicase, SNF2 family (NCBI ptt file)||259, 287|
|CAC3321||CAC3321||Uncharacterized protein homolog of yveG B.subtilis (NCBI ptt file)||185, 216|
|CAC3435||CAC3435||Hypothetical protein (NCBI ptt file)||185, 359|
|CAC3529||CAC3529||Hypothetical protein (NCBI ptt file)||71, 259|
|CAC3530||CAC3530||Hypothetical protein (NCBI ptt file)||71, 259|
|CAC3546||CAC3546||Highly conserved protein containing a domain related to cellulase catalitic domain and a thioredoxin domain (NCBI ptt file)||259, 300|
|CAC3581||CAC3581||HAD superfamily hydrolase (NCBI ptt file)||185, 289|
|CAC3591||CAC3591||Acyl-ACP thioesterase (NCBI ptt file)||157, 259|
|CAC3601||CAC3601||Nudix (MutT) family hydrolase (NCBI ptt file)||62, 259|
|CAC3656||CAC3656||Uncharacterized conserved protein, yaiN/yohL family (NCBI ptt file)||185, 291|
|CAC3687||CAC3687||Transcriptional regulator, AcrR family (NCBI ptt file)||140, 259|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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