PHATRDRAFT_30585 transcription-repair coupling factor (HELICc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_30585 chr_24 transcription-repair coupling factor (HELICc) 175226 178054 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0141

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0181
 0.26

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 98.8492 8.77E-24 463 - 592 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 98.8492 8.77E-24 463 - 592 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 87.778 6.88E-20 294 - 435 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 87.778 6.88E-20 294 - 435 superfamily 266587
CarD_TRCF CarD-like/TRCF domain; CarD is a Myxococcus xanthus protein required for the activation of light-... cl00588 74.7971 8.45E-16 99 - 243 specific 215001
CarD_CdnL_TRCF superfamily CarD-like/TRCF domain; CarD is a Myxococcus xanthus protein required for the activation of light-... - 74.7971 8.45E-16 99 - 243 superfamily 260515
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 99.4886 2.44E-23 264 - 458 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
38827 Not available 156533 247364 Not available Cre01.g021850.t1.1 AT3G02060.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments