10608 PS_pyruv_trans superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10608	chr_17	PS_pyruv_trans superfamily	215817	216915	-	PS_pyruv_trans superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444188	Thaps10608.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0224

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0084	0.43	0.00000000066 0.00000023

Most Highly Correlated Transcripts

19623 RRM3_MEI2_like 0.8996	25034 MDR3 0.897	10095 RNase_PH superfamily 0.8969	23526 Glo_EDI_BRP_like superfamily 0.8912	21090 hypothetical protein 0.8854	32395 RNA_pol 0.8832
268027 Met_10 0.8813	41106 cell cycle control protein cwf4 0.8784	4267 COG0790 0.8777	270120 Uup 0.8753

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PS_pyruv_trans superfamily		Polysaccharide pyruvyl transferase; Pyruvyl-transferases involved in peptidoglycan-associated...	-	92.1661	1.77E-21	77 - 339	superfamily	263732

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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