19623 RRM3_MEI2_likeThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
19623	chr_6	RRM3_MEI2_like	152635	155940	-	RRM3_MEI2_like

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448370	Thaps19623.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0326

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0084	0.43	0.00000000066 0.00000023

Most Highly Correlated Transcripts

268027 Met_10 0.9333	23812 TrmA 0.9267	269925 AAA_12 superfamily 0.9192	32395 RNA_pol 0.9188	23210 hypothetical protein 0.9014	10608 PS_pyruv_trans superfamily 0.8996
38472 HA2 0.8897	23242 PRK00142 0.8894	25767 hypothetical protein 0.8891	20825 hypothetical protein 0.8886

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM3_MEI2_like		RNA recognition motif 3 in plant Mei2-like proteins; This subgroup corresponds to the RRM3 of Mei2-...	cl17169	181.824	2.67E-53	969 - 1056	specific	240975
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	181.824	2.67E-53	969 - 1056	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_11144	PHATRDRAFT_11144	195308	185611	72409	Cre07.g338150.t1.1	AT5G61960.2	566643

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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