1237 Seipin superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1237 chr_1 Seipin superfamily 1017246 1018989 - Seipin superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445650 Thaps1237.1, Thaps1237.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0362

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0105
 0.42

Most Highly Correlated Transcripts

21308

RING
0.915

4333

hypothetical protein
0.9023

263035

HP_PGM_like
0.8967

20868

hypothetical protein
0.8845

22520

RecN
0.8801

10753

hypothetical protein
0.8755

8130

hypothetical protein
0.8742

6231

hypothetical protein
0.8713

24184

ArfGap
0.8669

9884

hypothetical protein
0.8658

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Seipin superfamily Putative adipose-regulatory protein (Seipin); Seipin is a protein of approximately 400 residues, in... - 91.518 2.40E-21 176 - 326 superfamily 253905

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47296 PHATRDRAFT_47296 234348 149689 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005622 GO:0006355 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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