19360 HELICcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
19360	chr_11a	HELICc	572157	574258	-	HELICc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443327	Thaps19360.1, Thaps19360.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0320

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0022	0.44	0.082 5300

Most Highly Correlated Transcripts

bd624 (bd624) Glyco_transf_34 superfamily 0.8994	262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.8976	35929 (MAPKKK) S_TKc 0.8975	34533 AAA_11 0.8938	5776 PROCN superfamily 0.8872	35129 (Tp_Myb2R9) PLN03142 0.8782
11434 hypothetical protein 0.8767	bd894 (bd894) Peptidase_M14_like superfamily 0.8766	22258 PUB 0.8749	263947 SNF2_N 0.8726

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	78.0484	6.97E-17	4 - 77	superfamily	238034
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	78.0484	6.97E-17	4 - 77	superfamily	238034

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12368	PHATRDRAFT_12368	Not available	191734	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0004386 GO:0005524 -

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