20266 RRM_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20266 chr_4 RRM_SF superfamily 1605721 1606053 + RRM_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443713 Thaps20266.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0132
 0.41

Most Highly Correlated Transcripts

1888

hypothetical protein
0.885

511

(GBP1) PRK09601
0.8627

24834

hypothetical protein
0.8452

bd1828

(bd1828) NA
0.8377

30939

S1_IF1
0.8371

268062

PRK14293
0.8371

1889

PRK00529
0.832

21475

hypothetical protein
0.827

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.8263

18796

UMP_CMP_kin_fam
0.8234

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 91.906 2.40E-25 1 - 76 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 83.4578 1.36E-20 1 - 90 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available AT4G13850.4 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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