21860 PRP40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21860 chr_3 PRP40 1490903 1494646 - PRP40

Synonyms

NCBI ID Ensembl Genomes exon ID
7449501 Thaps21860.2, Thaps21860.1, Thaps21860.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0271

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0147
 0.38

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9334

bd1946

(bd1946) NA
0.903

9591

efThoc1 superfamily
0.8736

6606

obgE
0.8655

268746

SXM1
0.8598

263644

(TopoII_2) PLN03128
0.8589

bd1934

(bd1934) NA
0.8586

23922

(Tp_AP2-EREBP9) regulator [Rayko]
0.8572

bd1840

(bd1840) NA
0.8558

38073

NAP
0.8529

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRP40 Splicing factor [RNA processing and modification] - 125.193 5.62E-30 457 - 904 multi-dom 227435

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43211 PHATRDRAFT_43211 136475 297279 Not available Not available AT1G44910.1 344681

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0004402 -

GO:0004402

histone acetyltransferase activity

Details: 
Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
GO Category: 
MF

Add comment

Log in to post comments