22498 DEXDc superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22498	chr_4	DEXDc superfamily	2328589	2329656	+	DEXDc superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452265	Thaps22498.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0219

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0268	0.24	0.49 2300

Most Highly Correlated Transcripts

41419 (RT4) RpsD 0.9488	261270 0.9402	28755 NSA2 0.9366	22334 hypothetical protein 0.9333	6835 DUF947 0.932	22099 hypothetical protein 0.9301
24016 Ebp2 superfamily 0.9283	40509 (RL30) Ribosomal_L24e_L24 0.9273	17145 WBS_methylT 0.9264	21725 Brix superfamily 0.9263

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DEXDc superfamily		DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	71.0282	1.61E-14	152 - 331	superfamily	266587

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	234827	202215	Not available	Not available	AT2G43110.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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