36330 (RpbY) RNAP_II_RPB11
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36330 chr_10 (RpbY) RNAP_II_RPB11 386160 386534 + RNAP_II_RPB11

Synonyms

NCBI ID Ensembl Genomes exon ID
7445859 Thaps36330.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0181

Most Highly Correlated Transcripts

22822

NTF2
0.8862

1819

hypothetical protein
0.8505

6686

hypothetical protein
0.8346

37585

MECDP_synthase
0.8316

19622

Sedlin_N
0.8309

bd1620

(bd1620) ThiG
0.829

268257

fabG
0.8266

31064

PTZ00044
0.8179

7942

hypothetical protein
0.8145

6402

hypothetical protein
0.8143

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_II_RPB11 RPB11 subunit of Eukaryotic RNA polymerase II; The eukaryotic RPB11 subunit of RNA polymerase (RNAP... cl11409 136.183 3.74E-42 13 - 105 specific 132902
RNAP_RPB11_RPB3 superfamily RPB11 and RPB3 subunits of RNA polymerase; The eukaryotic RPB11 and RPB3 subunits of RNA polymerase... - 136.183 3.74E-42 13 - 105 superfamily 264356

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47430 PHATRDRAFT_47430 231625 305329 252560 Cre13.g565550.t1.2 AT3G52090.1 523164

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0006350 GO:0046983 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0046983

protein dimerization activity

Details: 
The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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