23513 COG1258
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23513 chr_7 COG1258 1209253 1213136 - COG1258

Synonyms

NCBI ID Ensembl Genomes exon ID
7450653 Thaps23513.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0079
 0.38

Most Highly Correlated Transcripts

22356

PseudoU_synth_ScPUS7
0.9031

3858

PTZ00141
0.8998

5666

Las1 superfamily
0.8997

21802

hypothetical protein
0.8945

24015

Urb2 superfamily
0.8944

22685

COG2520
0.8943

31516

SIK1
0.8927

5794

hypothetical protein
0.8912

24429

PRMT5 superfamily
0.8902

25434

PRK00142
0.8876

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis] - 152.902 1.57E-39 936 - 1268 multi-dom 224178
COG4123 Predicted O-methyltransferase [General function prediction only] - 62.6485 7.31E-11 257 - 578 multi-dom 226608

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48788 PHATRDRAFT_48788 239602 102913 Not available Not available AT1G20410.1 329641

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

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