23811 ABC_ATPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23811 chr_8 ABC_ATPase superfamily 853813 854888 + ABC_ATPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452852 Thaps23811.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0054

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0121
 0.36

Most Highly Correlated Transcripts

4737

hypothetical protein
0.8991

plastid_psb28

0.8688

6735

hypothetical protein
0.8638

40801

Trans_IPPS_HT
0.8625

41655

Chloroa_b-bind
0.8508

35136

NA
0.8504

37934

GRX_PICOT_like
0.8417

7507

hypothetical protein
0.8392

2280

hypothetical protein
0.8355

3098

MCT1_N
0.8312

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 130.665 5.65E-36 28 - 239 superfamily 266551
CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] - 111.194 1.09E-28 24 - 252 multi-dom 224047

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
35896 PHATRDRAFT_32559 PHATRDRAFT_32559 274686 222900 456116 Cre13.g580300.t1.2 AT1G03905.1 490630

KEGG

KEGG description KEGG Pathway
RNA degradation map03018

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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