40801 Trans_IPPS_HT
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
40801 chr_5 Trans_IPPS_HT 1636097 1637644 + Trans_IPPS_HT
NCBI ID Ensembl Genomes exon ID
7448175 Thaps40801.2, Thaps40801.3, Thaps40801.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0021
Normalized Mean Residue
Thaps_bicluster_0127
0.38
Chloroa_b-bind
0.9185
PRK05279
0.9158
SufS_like
0.888
0.8789
0.8783
hypothetical protein
0.8776
PLN02321
0.8757
hypothetical protein
0.8739
rubredoxin
0.8733
GRX_PICOT_like
0.8662
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail; These trans-Isoprenyl Diphosphate Synthases (... cl00210 237.064 2.24E-76 19 - 316 specific 173833
Isoprenoid_Biosyn_C1 superfamily Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (... - 237.064 2.24E-76 19 - 316 superfamily 260263
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15180 PHATRDRAFT_15180 167774 243833 54868 Cre12.g511700.t1.2 AT2G34630.2 Not available
KEGG description KEGG Pathway
Not available Not available
GO:0008299 GO:0004659 GO:0004660 GO:0004661 GO:0004662 GO:0004663 GO:0008318 GO:0008412 GO:0008495 GO:0046428 -

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

prenyltransferase activity

Details: 
Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
GO Category: 
MF

protein farnesyltransferase activity

Details: 
Catalysis of the reaction: farnesyl diphosphate + protein-cysteine = S-farnesyl protein + diphosphate.
GO Category: 
MF

protein geranylgeranyltransferase activity

Details: 
Catalysis of the covalent addition of a geranylgeranyl (20-carbon isoprenoid) group via thioether linkages to a cysteine residue at or near the C terminus of a protein.
GO Category: 
MF

CAAX-protein geranylgeranyltransferase activity

Details: 
Catalysis of the reaction: geranylgeranyl diphosphate + protein-cysteine = S-geranylgeranyl-protein + diphosphate. This reaction is the formation of a thioether linkage between the C-1 atom of the geranylgeranyl group and a cysteine residue fourth from the C-terminus of the protein. The protein substrates have the C-terminal sequence CA1A2X, where the terminal residue, X, is preferably leucine and A2 should not be aromatic. Known substrates include most g-subunits of heterotrimeric G proteins and Ras-related GTPases such as members of the Ras and Rac/Rho families.
GO Category: 
MF

Rab geranylgeranyltransferase activity

Details: 
Catalysis of the reaction: 2 geranylgeranyl diphosphate + protein-cysteine = 2 S-geranylgeranyl-protein + 2 diphosphate. This reaction is the formation of two thioether linkages between the C-1 atom of the geranylgeranyl groups and two cysteine residues within the terminal sequence motifs XXCC, XCXC or CCXX. Known substrates include Ras-related GTPases of a single family and the Rab family.
GO Category: 
MF

protein prenyltransferase activity

Details: 
Catalysis of the covalent addition of an isoprenoid group such as a farnesyl or geranylgeranyl group via thioether linkages to a cysteine residue in a protein.
GO Category: 
MF

4-hydroxybenzoate octaprenyltransferase activity

Details: 
Catalysis of the reaction: farnesylfarnesylgeranyl diphosphate + p-hydroxybenzoate = 3-octaprenyl-4-hydroxybenzoate + diphosphate.
GO Category: 
MF

protoheme IX farnesyltransferase activity

Details: 
Catalysis of the reaction: protoheme IX + (2E,6E)-farnesyl diphosphate + H2O = heme o + diphosphate.
GO Category: 
MF

1,4-dihydroxy-2-naphthoate octaprenyltransferase activity

Details: 
Catalysis of the reaction: 1,4-dihydroxy-2-naphthoate + polyprenylpyrophosphate = dimethylmenaquinone + diphosphate + CO2.
GO Category: 
MF
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