25027 RRM_SF superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25027	chr_15	RRM_SF superfamily	582410	584267	-	RRM_SF superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442106	Thaps25027.2, Thaps25027.3, Thaps25027.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0240

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0233	0.34	0.000038 0.14

Most Highly Correlated Transcripts

35164 acolac_lg 0.9224	27873 PLN02274 0.9045	4372 hypothetical protein 0.8913	508 CBF5 0.8696	29232 PLN02502 0.8559	11220 eIF2A 0.8542
269399 PLN02678 0.8534	33670 RNRR2 0.8534	32395 RNA_pol 0.8522	25799 TYW3 superfamily 0.8509

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	61.5768	8.11E-12	65 - 158	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	149773	100907	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

GO:0003676 -

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