260758 TFCD_CThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
260758	chr_1	TFCD_C	206861	211074	+	TFCD_C

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445115	Thaps260758.5, Thaps260758.6, Thaps260758.7, Thaps260758.2, Thaps260758.3, Thaps260758.1, Thaps260758.8, Thaps260758.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0193

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0194	0.41	1.9 2.2

Most Highly Correlated Transcripts

bd446 (bd446) HrpA 0.9594	bd624 (bd624) Glyco_transf_34 superfamily 0.9426	bd392 (bd392) DEXDc 0.9321	bd1949 (bd1949) NA 0.9208	bd1465 (bd1465) PKc_like superfamily 0.9086	264064 SbcC 0.9023
37862 S_TKc 0.8927	bd1777 (bd1777) NA 0.8821	263349 COG4178 0.8812	bd1765 (bd1765) NA 0.8807

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TFCD_C		Tubulin folding cofactor D C terminal; This domain family is found in eukaryotes, and is typically...	cl19887	177.486	2.67E-50	905 - 1098	specific	257161
TFCD_C superfamily		Tubulin folding cofactor D C terminal; This domain family is found in eukaryotes, and is typically...	-	98.0976	6.40E-21	371 - 600	superfamily	268240
TFCD_C superfamily		Tubulin folding cofactor D C terminal; This domain family is found in eukaryotes, and is typically...	-	98.0976	6.40E-21	371 - 600	superfamily	268240

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46823	PHATR_46823	184596	257408	217910	Cre12.g490250.t1.2	AT3G60740.1	298608

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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