Thaps_bicluster_0194 Residual: 0.41
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0194 0.41 Thalassiosira pseudonana
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Displaying 1 - 36 of 36
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10140 hypothetical protein

10140 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10140
10419 hypothetical protein

10419 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10419
10485 hypothetical protein

10485 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10485
10895 PLN02852

10895 - PLN02852

GO Terms:

GO:0006118, GO:0015036, GO:0004324, GO:0015039

CD Domains:

Go To Gene Page:

10895
11081 hypothetical protein

11081 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11081
11752 2OG-FeII_Oxy_3

11752 - 2OG-FeII_Oxy_3

GO Terms:

GO:0006520, GO:0016491

CD Domains:

Go To Gene Page:

11752
1615 hypothetical protein

1615 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1615
21141 RibD

21141 - RibD

GO Terms:

GO:0008703, GO:0009231

CD Domains:

Go To Gene Page:

21141
22186 MFS

22186 - MFS

GO Terms:

NA

CD Domains:

Go To Gene Page:

22186
22245 hypothetical protein

22245 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22245
24201 hypothetical protein

24201 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24201
2426 MviM

2426 - MviM

GO Terms:

GO:0006118, GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

2426
24295 (RPN2) RPN2

24295 - (RPN2) RPN2

GO Terms:

GO:0015992, GO:0016020, GO:0016469, GO:0016820, GO:0006508, GO:0030693, GO:0000074, GO:0004298, GO:0004299

CD Domains:

Go To Gene Page:

24295
24529 hypothetical protein

24529 - hypothetical protein

GO Terms:

GO:0004672, GO:0004682, GO:0004691, GO:0005952, GO:0005956, GO:0008603, GO:0008605

CD Domains:

Go To Gene Page:

24529
24714 hypothetical protein

24714 - hypothetical protein

GO Terms:

GO:0008152, GO:0008415

CD Domains:

Go To Gene Page:

24714
24990 hypothetical protein

24990 - hypothetical protein

GO Terms:

GO:0008757

CD Domains:

Go To Gene Page:

24990
25158 hypothetical protein

25158 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25158
25168 hypothetical protein

25168 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25168
25225 Cullin_binding superfamily

25225 - Cullin_binding superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

25225
25263 Patatin_and_cPLA2 superfamily

25263 - Patatin_and_cPLA2 superfamily

GO Terms:

GO:0003824, GO:0045735

CD Domains:

Go To Gene Page:

25263
25360 hypothetical protein

25360 - hypothetical protein

GO Terms:

GO:0003677

CD Domains:

Go To Gene Page:

25360
260758 TFCD_C

260758 - TFCD_C

GO Terms:

NA

CD Domains:

Go To Gene Page:

260758
262298 BaeS

262298 - BaeS

GO Terms:

GO:0005524, GO:0016310, GO:0016772, GO:0006468, GO:0016301

CD Domains:

Go To Gene Page:

262298
263118 ABC_ATPase superfamily

263118 - ABC_ATPase superfamily

GO Terms:

GO:0005524, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

263118
263349 COG4178

263349 - COG4178

GO Terms:

GO:0005524, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

263349
263989 (HSF13) hypothetical protein

263989 - (HSF13) hypothetical protein

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677, GO:0005198, GO:0005874, GO:0007018

CD Domains:

Go To Gene Page:

263989
264064 SbcC

264064 - SbcC

GO Terms:

GO:0003700, GO:0005622, GO:0006355, GO:0005524, GO:0016887, GO:0016787

CD Domains:

Go To Gene Page:

264064
31658 DUF3437 superfamily

31658 - DUF3437 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

31658
38294 CBS_like

38294 - CBS_like

GO Terms:

GO:0003824, GO:0008152, GO:0004124

CD Domains:

Go To Gene Page:

38294
5079 TRM13 superfamily

5079 - TRM13 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5079
5105 hypothetical protein

5105 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5105
6170 hypothetical protein

6170 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6170
7363 hypothetical protein

7363 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7363
7569 hypothetical protein

7569 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7569
7886 hypothetical protein

7886 - hypothetical protein

GO Terms:

GO:0008080

CD Domains:

Go To Gene Page:

7886
8159 hypothetical protein

8159 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8159
GO ID Go Term p-value q-value Cluster
GO:0009231 riboflavin biosynthesis 0.0184724 1 Thaps_bicluster_0194
GO:0016310 phosphorylation 0.0396209 1 Thaps_bicluster_0194
GO:0015992 proton transport 0.0455847 1 Thaps_bicluster_0194
GO:0006520 amino acid metabolism 0.0632695 1 Thaps_bicluster_0194
GO:0007018 microtubule-based movement 0.125531 1 Thaps_bicluster_0194
GO:0008152 metabolism 0.126308 1 Thaps_bicluster_0194
GO:0000074 regulation of cell cycle 0.170973 1 Thaps_bicluster_0194
GO:0006118 electron transport 0.198115 1 Thaps_bicluster_0194
GO:0006355 regulation of transcription, DNA-dependent 0.245811 1 Thaps_bicluster_0194
GO:0006468 protein amino acid phosphorylation 0.491617 1 Thaps_bicluster_0194
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