262645 Glyco_18
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
262645 chr_5 Glyco_18 2040923 2043900 + Glyco_18
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0261
Normalized Mean Residue
Thaps_bicluster_0004
0.42
hypothetical protein
0.9507
MYSc
0.9506
CAP_ED
0.9503
SNF2_N
0.9499
LRR_RI superfamily
0.945
Strumpellin superfamily
0.944
GH18_chitinase-like superfamily
0.9434
WD40 superfamily
0.9432
hypothetical protein
0.9386
MYSc
0.938
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GH18_chitinase-like superfamily The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer... - 238.684 2.76E-71 467 - 823 superfamily 263970
Glyco_18 Glyco_18 domain; Glyco_18 domain. - 252.214 4.36E-76 467 - 823 multi-dom 214753
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Amino sugar and nucleotide sugar metabolism map00520
GO:0008152 GO:0016787 GO:0003824 GO:0005975 GO:0004568 GO:0008843 -

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

chitinase activity

Details: 
Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins.
GO Category: 
MF

endochitinase activity

Details: 
Catalysis of the hydrolysis of nonterminal (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. Typically, endochitinases cleave randomly within the chitin chain.
GO Category: 
MF
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