34228 Strumpellin superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34228	chr_5	Strumpellin superfamily	1079963	1083960	+	Strumpellin superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450048	Thaps34228.1, Thaps34228.6, Thaps34228.5, Thaps34228.3, Thaps34228.2, Thaps34228.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0378

Most Highly Correlated Transcripts

5321 CobN-Mg_chel superfamily 0.9475	262645 Glyco_18 0.944	263734 LRR_RI superfamily 0.9433	262527 pi 4-kinase 0.9411	262607 WD40 superfamily 0.94	12602 MYSc 0.9331
262104 PI-PLCc_GDPD_SF superfamily 0.9315	263859 GH18_chitinase-like superfamily 0.93	37960 (MYO5) MYSc 0.9279	bd446 (bd446) HrpA 0.9271

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Strumpellin superfamily		Hereditary spastic paraplegia protein strumpellin; This is a family of proteins conserved from...	-	887.447	0	48 - 1126	superfamily	255864

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	552275

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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