268252 Utp21 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268252	chr_2	Utp21 superfamily	910027	914375	-	Utp21 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450249	Thaps268252.6, Thaps268252.3, Thaps268252.2, Thaps268252.5, Thaps268252.4, Thaps268252.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0166	0.18	30 800

Most Highly Correlated Transcripts

268130 hypothetical protein 0.9663	32374 TPR 0.9489	21082 Cupin_8 superfamily 0.9475	25129 hypothetical protein 0.942	262722 DEXDc superfamily 0.9418	20985 COG5593 0.9394
21173 hypothetical protein 0.9391	40884 (RPA1) RNAP_I_RPA1_N 0.9337	268735 (GPB1) WD40 0.9317	23862 Syo1_like superfamily 0.9289

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Utp21 superfamily		Utp21 specific WD40 associated putative domain; Utp21 is a subunit of U3 snoRNP, which is essential...	-	121.623	2.27E-30	1024 - 1236	superfamily	252441
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	78.1456	9.99E-16	781 - 993	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	77.8215	5.42E-15	777 - 1006	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42495	PHATRDRAFT_42495	180852	182115	310412	Cre10.g466250.t1.2	AT4G04940.1	304396

KEGG

KEGG description	KEGG Pathway
Ribosome biogenesis in eukaryotes	map03008

GO Terms

Not available -

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