269391 MATE_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269391 chr_8 MATE_like superfamily 1140712 1142775 + MATE_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444951 Thaps269391.3, Thaps269391.1, Thaps269391.4, Thaps269391.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0335

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0005
 0.39

Most Highly Correlated Transcripts

40200

TRX_reduct
0.8844

36007

Aldolase_II superfamily
0.8837

19158

GRX_PICOT_like
0.8794

268443

SAICAR_synt_Sc
0.8751

267979

HCO3_cotransp superfamily
0.8728

36599

CysJ
0.8666

36995

LplA
0.8666

29013

PAP1
0.8611

262599

HA
0.8601

10946

CwfJ_C_1 superfamily
0.8595

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MATE_like superfamily Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins... - 150.019 3.10E-40 27 - 469 superfamily 263758
NorM Na+-driven multidrug efflux pump [Defense mechanisms] - 121.948 1.37E-30 27 - 470 multi-dom 223608

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_44111 PHATR_44111 136623 301568 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016020 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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