269714 nt_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269714 chr_13 nt_trans superfamily 983058 986413 - nt_trans superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0256
 0.42

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9569

bd529

(bd529) SNF2_N
0.9431

bd843

(bd843) NA
0.9307

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9291

2085

hypothetical protein
0.9151

264672

(Cdc45) CDC45 superfamily
0.9067

268553

POLBc_epsilon
0.9041

bd890

(bd890) NA
0.9024

bd1214

(bd1214) KISc_C_terminal
0.902

bd950

(bd950) NA
0.8977

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5... cl17190 236.221 2.61E-72 189 - 340 specific 238985
NK superfamily Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of... - 236.221 2.61E-72 189 - 340 superfamily 266541
pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules... cl00217 161.105 3.34E-45 799 - 976 specific 238239
pyrophosphatase superfamily Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules... - 161.105 3.34E-45 799 - 976 superfamily 260270
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 329.979 1.31E-103 375 - 769 superfamily 260139
sopT ATP sulphurylase; This enzyme forms adenosine 5'-phosphosulfate (APS) from ATP and free... - 298.54 1.74E-91 350 - 768 multi-dom 232928

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19901 PHATRDRAFT_19901 178126 63002 452787 Not available AT4G14680.1 354656

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0000103 GO:0004781 GO:0005524 GO:0016301 GO:0016772 GO:0000287 GO:0008152 GO:0016462 GO:0004427 GO:0005737 -

GO:0000103

sulfate assimilation

Details: 
The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds.
GO Category: 
BP

GO:0004781

sulfate adenylyltransferase (ATP) activity

Details: 
Catalysis of the reaction: ATP + sulfate = diphosphate + adenylylsulfate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016301

kinase activity

Details: 
Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
GO Category: 
MF

GO:0016772

transferase activity, transferring phosphorus-containing groups

Details: 
Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
GO Category: 
MF

GO:0000287

magnesium ion binding

Details: 
Interacting selectively and non-covalently with magnesium (Mg) ions.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016462

pyrophosphatase activity

Details: 
Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
GO Category: 
MF

GO:0004427

inorganic diphosphatase activity

Details: 
Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

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