30851 (CLPC2) clpA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30851 chr_1 (CLPC2) clpA 2015311 2018554 + clpA

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0010

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0130
 0.40

Most Highly Correlated Transcripts

bd1161

(bd1161) NA
0.9514

bd634

(bd634) NA
0.9473

268592

VDE superfamily
0.9211

574

PRK05444
0.9135

22863

COG1026
0.8856

33663

PLN02649
0.8835

34543

(PPC2) PEPcase superfamily
0.8815

263714

LPLAT_GPAT
0.8754

37288

PLN02487
0.8728

bd783

(bd783) Rieske superfamily
0.8722

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 82.1939 6.19E-18 551 - 700 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 82.1939 6.19E-18 551 - 700 superfamily 267297
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 82.1939 6.19E-18 551 - 700 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 82.1939 6.19E-18 551 - 700 superfamily 267297
clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification,... - 801.11 0 70 - 833 multi-dom 223616

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16455 PHATRDRAFT_16455 210164 246890 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0004176 GO:0004252 GO:0006508 GO:0000166 GO:0017111 GO:0008462 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0004176

ATP-dependent peptidase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
GO Category: 
MF

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0008462

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments