31710 RIO1_euk
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31710 chr_2 RIO1_euk 226983 229192 + RIO1_euk

Synonyms

NCBI ID Ensembl Genomes exon ID
7442202 Thaps31710.3, Thaps31710.2, Thaps31710.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0224

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0257
 0.20

Most Highly Correlated Transcripts

bd1709

(bd1709) NA
0.9489

bd1667

(bd1667) Mpp10
0.9486

40089

COG0478
0.9464

5294

hypothetical protein
0.9401

bd96

(bd96) eIF-3_zeta
0.9384

7265

PIN_SF superfamily
0.9381

268688

hypothetical protein
0.9288

20985

COG5593
0.9167

12971

WD40 superfamily
0.9145

32374

TPR
0.9142

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is... cl17248 370.844 6.46E-125 210 - 420 specific 240170
RIO superfamily RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger... - 370.844 6.46E-125 210 - 420 superfamily 266585
RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms /... - 278.049 5.82E-88 180 - 453 multi-dom 224632

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50135 PHATRDRAFT_50135 273960 192692 64080 Cre13.g580900.t1.1 AT5G37350.1 298604

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005554 GO:0004672 GO:0005524 GO:0006468 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

GO:0004672

protein kinase activity

Details: 
Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006468

protein phosphorylation

Details: 
The process of introducing a phosphate group on to a protein.
GO Category: 
BP

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