7265 PIN_SF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7265 chr_7 PIN_SF superfamily 1737789 1740145 - PIN_SF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450587 Thaps7265.2, Thaps7265.3, Thaps7265.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0257
 0.20

Most Highly Correlated Transcripts

268559

COG1084
0.9617

bd1709

(bd1709) NA
0.9521

268689

RRM6_RBM19_RRM5_MRD1
0.9434

31710

RIO1_euk
0.9381

22212

COG5638
0.9381

268688

hypothetical protein
0.9379

23862

Syo1_like superfamily
0.9376

20985

COG5593
0.937

39022

COG2319
0.935

21082

Cupin_8 superfamily
0.9333

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PIN_SF superfamily PIN (PilT N terminus) domain: Superfamily; PIN_SF The PIN (PilT N terminus) domain belongs to a... - 99.9683 1.22E-24 12 - 107 superfamily 265458
NOB1_Zn_bind superfamily Nin one binding (NOB1) Zn-ribbon like; This domain corresponds to a zinc ribbon and is found on the... - 92.2745 2.04E-22 573 - 650 superfamily 255030
NOB1_Zn_bind superfamily Nin one binding (NOB1) Zn-ribbon like; This domain corresponds to a zinc ribbon and is found on the... - 92.2745 2.04E-22 573 - 650 superfamily 255030

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_31725 PHATRDRAFT_31725 Not available 282185 202851 Cre01.g031750.t1.2 AT5G41190.1 314356

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

Not available -

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