35780 rplC
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
35780 chr_8 rplC 383569 384783 + rplC
NCBI ID Ensembl Genomes exon ID
7445562 Thaps35780.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0050
Normalized Mean Residue
Thaps_bicluster_0066
0.42
Aldolase_II superfamily
0.9328
0.923
PLN02321
0.9149
SAICAR_synt_Sc
0.914
GRX_PICOT_like
0.9096
AAA
0.9062
Aldolase_Class_I superfamily
0.9041
DHQS
0.9031
Ribosomal_S15p_S13e
0.9017
PRK05279
0.8998
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
rplC 50S ribosomal protein L3; Validated cl00324 319.368 6.10E-108 139 - 351 specific 234564
Ribosomal_L3 superfamily Ribosomal protein L3; Ribosomal protein L3. - 319.368 6.10E-108 139 - 351 superfamily 260355
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10617 PHATR_10617 197206 299956 446442 Cre01.g022250.t1.1 AT3G17465.1 539912
KEGG description KEGG Pathway
Ribosome map03010
GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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