37071 TIM_phosphate_binding superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37071 chr_13 TIM_phosphate_binding superfamily 213903 215249 + TIM_phosphate_binding superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445712 Thaps37071.1, Thaps37071.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0190
 0.26

Most Highly Correlated Transcripts

21933

RNA_pol_I_A49 superfamily
0.9056

29144

PRK06349
0.8887

5540

hypothetical protein
0.887

22139

Cyt_C5_DNA_methylase superfamily
0.8842

39845

(DNA_TopoIV) PRK05560
0.8832

264345

SpoU
0.8806

22672

hypothetical protein
0.8743

268880

WD40 superfamily
0.874

1374

RRM
0.8733

20879

(Tp_CCCH21) regulator [Rayko]
0.8725

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRTases_typeI Phosphoribosyl transferase (PRT)-type I domain; Phosphoribosyl transferase (PRT) domain. The type I... cl00309 68.9616 3.17E-14 248 - 387 specific 206754
PRTases_typeI superfamily Phosphoribosyl transferase (PRT)-type I domain; Phosphoribosyl transferase (PRT) domain. The type I... - 68.9616 3.17E-14 248 - 387 superfamily 260342
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 109.563 1.88E-27 34 - 175 superfamily 266538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11740 PHATRDRAFT_11740 204937 263380 436330 Not available Not available 514737

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009116 GO:0016740 GO:0004588 GO:0006221 -

GO:0009116

nucleoside metabolic process

Details: 
The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
GO Category: 
BP

GO:0016740

transferase activity

Details: 
Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO Category: 
MF

GO:0004588

orotate phosphoribosyltransferase activity

Details: 
Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate.
GO Category: 
MF

GO:0006221

pyrimidine nucleotide biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
GO Category: 
BP

Add comment

Log in to post comments