264345 SpoU
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264345 chr_15 SpoU 885801 887767 - SpoU

Synonyms

NCBI ID Ensembl Genomes exon ID
7443990 Thaps264345.3, Thaps264345.2, Thaps264345.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0272
 0.25

Most Highly Correlated Transcripts

33670

RNRR2
0.9492

27083

eIF3_N superfamily
0.9389

262400

ANK
0.9376

bd1945

(bd1945) NA
0.9362

30691

AdoMet_MTases
0.936

268688

hypothetical protein
0.936

24038

hypothetical protein
0.9331

21462

(rpoT) rpot-like RNA polymerase
0.9325

22334

hypothetical protein
0.9321

38472

HA2
0.932

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. cl17307 101.432 4.10E-25 424 - 581 specific 249983
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 101.432 4.10E-25 424 - 581 superfamily 266618
SpoU rRNA methylases [Translation, ribosomal structure and biogenesis] - 135.107 5.06E-36 360 - 583 multi-dom 223640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15019 PHATRDRAFT_15019 178319 260885 54726 Cre13.g566150.t1.2 AT2G19870.1 418960

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

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