38143 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38143 chr_18 WD40 superfamily 750189 751884 - WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444834 Thaps38143.3, Thaps38143.1, Thaps38143.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0166
 0.18

Most Highly Correlated Transcripts

22212

COG5638
0.9246

42599

SrmB
0.9208

2772

Utp14
0.9183

bd1709

(bd1709) NA
0.9157

268559

COG1084
0.9151

268689

RRM6_RBM19_RRM5_MRD1
0.9132

24016

Ebp2 superfamily
0.9126

32374

TPR
0.9119

7265

PIN_SF superfamily
0.9106

39022

COG2319
0.9098

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 99.7168 1.51E-23 225 - 459 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 97.8519 4.45E-22 226 - 498 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8842 PHATRDRAFT_8842 186034 220133 103787 Cre01.g035000.t1.2 AT4G18905.1 561350

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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