38472 HA2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38472 chr_20 HA2 94186 97974 + HA2

Synonyms

NCBI ID Ensembl Genomes exon ID
7448489 Thaps38472.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0289

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0096
 0.39

Most Highly Correlated Transcripts

25767

hypothetical protein
0.9418

264345

SpoU
0.932

31150

rpsI
0.9246

7151

hypothetical protein
0.923

7929

hypothetical protein
0.919

23345

hypothetical protein
0.9182

269925

AAA_12 superfamily
0.918

2392

hypothetical protein
0.9168

2318

Bromodomain
0.9165

270120

Uup
0.9159

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 119.364 1.76E-30 632 - 770 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 119.364 1.76E-30 632 - 770 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 62.2552 4.17E-11 795 - 953 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 62.2552 4.17E-11 795 - 953 superfamily 238034
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 127.333 6.06E-34 1007 - 1099 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 127.333 6.06E-34 1007 - 1099 superfamily 262181
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 123.562 2.00E-32 1133 - 1236 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 123.562 2.00E-32 1133 - 1236 superfamily 254381
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 110.274 8.37E-27 609 - 796 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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