38667 (Lhcf4) PLN00120
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38667 chr_22 (Lhcf4) PLN00120 367879 368493 + PLN00120

Synonyms

NCBI ID Ensembl Genomes exon ID
7442816 Thaps38667.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0022

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0262
 0.15

Most Highly Correlated Transcripts

bd218

(bd218) Chloroa_b-bind superfamily
0.9983

bd1820

(bd1820) Fasciclin
0.9828

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9806

260392

(Lhcf2) fucoxanthin chlorophyll a/c protein 2
0.9769

270222

0.9755

270233

hypothetical protein
0.9739

42962

(Lhcf5) PLN00120
0.9693

38715

PLN00120
0.9635

39813

Chloroa_b-bind superfamily
0.9615

38583

(Lhcf1) PLN00120
0.9585

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional cl02879 339.411 3.96E-119 2 - 204 specific 215063
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 339.411 3.96E-119 2 - 204 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 272028 305325 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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