42962 (Lhcf5) PLN00120Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
42962	chr_20	(Lhcf5) PLN00120	457403	458098	+	PLN00120

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443377	Thaps42962.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0218	0.15	610 9100

Most Highly Correlated Transcripts

bd218 (bd218) Chloroa_b-bind superfamily 0.9885	5174 (Lhcf8) PLN00120 0.9831	260392 (Lhcf2) fucoxanthin chlorophyll a/c protein 2 0.9823	270233 hypothetical protein 0.9786	38583 (Lhcf1) PLN00120 0.9772	bd1820 (bd1820) Fasciclin 0.9768
bd1160 (bd1160) Chloroa_b-bind superfamily 0.9757	39813 Chloroa_b-bind superfamily 0.9721	38715 PLN00120 0.9713	21667 (Lhcf7) fucoxanthin chlorophyll a/c light-harvesting protein, major type 0.9706

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN00120		fucoxanthin-chlorophyll a-c binding protein; Provisional	cl02879	341.723	3.81E-120	24 - 200	specific	215063
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	341.723	3.81E-120	24 - 200	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
35684		Not available	Not available	Not available	442651	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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