7029 SETThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7029	chr_7	SET	1073850	1076054	+	SET

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447067	Thaps7029.1, Thaps7029.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0135

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0280	0.36	1.3 15

Most Highly Correlated Transcripts

19435 PTZ00184 0.8951	6233 DUF4239 0.8938	8445 hypothetical protein 0.8914	1985 hypothetical protein 0.8869	23586 hypothetical protein 0.886	21603 hypothetical protein 0.88
25506 hypothetical protein 0.8733	21771 hypothetical protein 0.8728	3694 hypothetical protein 0.8707	22850 DUF4239 0.8705

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SET		SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be...	cl02566	66.3679	5.08E-13	314 - 455	specific	250181
SET superfamily		SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be...	-	66.3679	5.08E-13	314 - 455	superfamily	261347

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	196111	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments