8255 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8255 chr_10 WD40 superfamily 106290 110138 + WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451034 Thaps8255.1, Thaps8255.3, Thaps8255.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0261

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0036
 0.41

Most Highly Correlated Transcripts

bd624

(bd624) Glyco_transf_34 superfamily
0.923

bd392

(bd392) DEXDc
0.896

bd446

(bd446) HrpA
0.895

bd1465

(bd1465) PKc_like superfamily
0.8902

261325

ARM
0.8828

2984

Dynein_heavy superfamily
0.8781

bd1949

(bd1949) NA
0.87

bd668

(bd668) NA
0.8673

5788

TFIIS_M
0.8653

24216

hypothetical protein
0.8529

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein... cl00065 64.0547 4.39E-12 153 - 248 specific 238020
FN3 superfamily Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein... - 64.0547 4.39E-12 153 - 248 superfamily 260168
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 121.288 7.74E-30 926 - 1122 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 78.2067 3.35E-15 884 - 1149 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 468125

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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