25799 TYW3 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25799	chr_22	TYW3 superfamily	991411	993586	+	TYW3 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448247	Thaps25799.3, Thaps25799.1, Thaps25799.2, Thaps25799.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0221

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0234	0.27	5.4 1.5

Most Highly Correlated Transcripts

27873 PLN02274 0.9302	6250 reductase 0.9194	22672 hypothetical protein 0.9161	39022 COG2319 0.9133	11949 Nop14 0.9092	261462 hypothetical protein 0.9084
24550 W2_eIF4G1_like 0.908	1835 hypothetical protein 0.907	32395 RNA_pol 0.902	bd1945 (bd1945) NA 0.8995

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TYW3 superfamily		Methyltransferase TYW3; The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been...	-	88.0189	5.96E-20	16 - 320	superfamily	260574

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46848	PHATR_46848	238083	257404	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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