Thaps_bicluster_0045 Residual: 0.44
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0045 0.44 Thalassiosira pseudonana
Displaying 1 - 56 of 56
10345 hypothetical protein

10345 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10345
10723 hypothetical protein

10723 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10723
10777 hypothetical protein

10777 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10777
10795 hypothetical protein

10795 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10795
11074 Bestrophin superfamily

11074 - Bestrophin superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

11074
11218 hypothetical protein

11218 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11218
11226 hypothetical protein

11226 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11226
12055 hypothetical protein

12055 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12055
12091 DUF4033

12091 - DUF4033

GO Terms:

NA

CD Domains:

Go To Gene Page:

12091
16511 Nuc_sug_transp

16511 - Nuc_sug_transp

GO Terms:

GO:0000139, GO:0005351, GO:0008643, GO:0016021

CD Domains:

Go To Gene Page:

16511
2095 hypothetical protein

2095 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2095
21131 Voltage_gated_ClC superfamily

21131 - Voltage_gated_ClC superfamily

GO Terms:

GO:0004812, GO:0005524, GO:0006418

CD Domains:

Go To Gene Page:

21131
21277 Ion_trans

21277 - Ion_trans

GO Terms:

GO:0005261, GO:0006812, GO:0016020, GO:0005216, GO:0006811

CD Domains:

Go To Gene Page:

21277
22120 Dynamitin

22120 - Dynamitin

GO Terms:

GO:0003700, GO:0005622, GO:0006355, GO:0008080

CD Domains:

Go To Gene Page:

22120
22198 hypothetical protein

22198 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22198
22816 hypothetical protein

22816 - hypothetical protein

GO Terms:

GO:0008757

CD Domains:

Go To Gene Page:

22816
23387 DnaJ

23387 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

23387
2435 hypothetical protein

2435 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2435
24770 Mth938-like superfamily

24770 - Mth938-like superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

24770
25478 hypothetical protein

25478 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25478
260835 Phytase-like

260835 - Phytase-like

GO Terms:

NA

CD Domains:

Go To Gene Page:

260835
260868

260868 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

260868
260899 (RPN) SAC3_GANP

260899 - (RPN) SAC3_GANP

GO Terms:

GO:0005838, GO:0006508

CD Domains:

Go To Gene Page:

260899
261140 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase

261140 - UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase

GO Terms:

GO:0016263

CD Domains:

Go To Gene Page:

261140
262860 NRDE superfamily

262860 - NRDE superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

262860
264664 TRX_family

264664 - TRX_family

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

264664
26473 MPP_PP2A_PP4_PP6

26473 - MPP_PP2A_PP4_PP6

GO Terms:

GO:0016787, GO:0000158, GO:0004721, GO:0004723, GO:0004724, GO:0005963, GO:0008420, GO:0008597, GO:0015071, GO:0017018, GO:0017020, GO:0017023, GO:0030357

CD Domains:

Go To Gene Page:

26473
268858 hypothetical protein

268858 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

268858
26889 (RL38) Ribosomal_L38e

26889 - (RL38) Ribosomal_L38e

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006412

CD Domains:

Go To Gene Page:

26889
269322 (atpA) PRK09281

269322 - (atpA) PRK09281

GO Terms:

GO:0005524, GO:0015986, GO:0016469, GO:0046933, GO:0046961, GO:0006754, GO:0016820, GO:0003936

CD Domains:

Go To Gene Page:

269322
269416 (Tp_Myb1R6) zinc finger like protein

269416 - (Tp_Myb1R6) zinc finger like protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

269416
270259

270259 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

270259
2919 hypothetical protein

2919 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2919
3085 hypothetical protein

3085 - hypothetical protein

GO Terms:

GO:0005509, GO:0004308

CD Domains:

Go To Gene Page:

3085
31599 MoCF_BD superfamily

31599 - MoCF_BD superfamily

GO Terms:

GO:0006777, GO:0003919

CD Domains:

Go To Gene Page:

31599
31875 Pumilio

31875 - Pumilio

GO Terms:

GO:0003723, GO:0016071

CD Domains:

Go To Gene Page:

31875
3212 hypothetical protein

3212 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3212
33312 NnrU superfamily

33312 - NnrU superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

33312
35133 (SIT3) Silic_transp

35133 - (SIT3) Silic_transp

GO Terms:

NA

CD Domains:

Go To Gene Page:

35133
36088 PTZ00168

36088 - PTZ00168

GO Terms:

GO:0005488, GO:0006810, GO:0016020, GO:0005743

CD Domains:

Go To Gene Page:

36088
37306 (Tp_sigma70.5) Sig70-cyanoRpoD

37306 - (Tp_sigma70.5) Sig70-cyanoRpoD

GO Terms:

GO:0003677, GO:0003700, GO:0006352, GO:0006355, GO:0016987

CD Domains:

Go To Gene Page:

37306
38230 MYSc

38230 - MYSc

GO Terms:

GO:0003774, GO:0005524, GO:0016459, GO:0004351

CD Domains:

Go To Gene Page:

38230
40669 Ubiquitin

40669 - Ubiquitin

GO Terms:

GO:0006464, GO:0003735, GO:0005622, GO:0005840, GO:0006412

CD Domains:

Go To Gene Page:

40669
41256 PRK09280

41256 - PRK09280

GO Terms:

GO:0005524, GO:0015986, GO:0016469, GO:0046933, GO:0046961, GO:0006754, GO:0000166, GO:0017111, GO:0008553, GO:0016021, GO:0045255, GO:0003936

CD Domains:

Go To Gene Page:

41256
4218 hypothetical protein

4218 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4218
4752 hypothetical protein

4752 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4752
5636 PLN02812

5636 - PLN02812

GO Terms:

GO:0003824, GO:0008152, GO:0030272

CD Domains:

Go To Gene Page:

5636
6164 hypothetical protein

6164 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6164
6567 hypothetical protein

6567 - hypothetical protein

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

6567
7647 (Tp_Myb1R_SHAQKYF9b) MYB DNA binding protein/ transcription factor-like protein

7647 - (Tp_Myb1R_SHAQKYF9b) MYB DNA binding protein/ transcription factor-like protein

GO Terms:

GO:0003677, GO:0005634

CD Domains:

Go To Gene Page:

7647
8069 (TUB2) PLN00220

8069 - (TUB2) PLN00220

GO Terms:

GO:0005198, GO:0005874, GO:0007018, GO:0003924, GO:0005525, GO:0043234, GO:0051258

CD Domains:

Go To Gene Page:

8069
8148 AarF

8148 - AarF

GO Terms:

NA

CD Domains:

Go To Gene Page:

8148
914 hypothetical protein

914 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

914
9489 hypothetical protein

9489 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9489
ThpsCp094 (dnaK) heat shock protein 70

ThpsCp094 - (dnaK) heat shock protein 70

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCp094
GO ID Go Term p-value q-value Cluster
GO:0006754 ATP biosynthesis 0.000129039 0.353825 Thaps_bicluster_0045
GO:0015986 ATP synthesis coupled proton transport 0.0197184 1 Thaps_bicluster_0045
GO:0006777 Mo-molybdopterin cofactor biosynthesis 0.0282075 1 Thaps_bicluster_0045
GO:0051258 protein polymerization 0.0374397 1 Thaps_bicluster_0045
GO:0016071 mRNA metabolism 0.0420242 1 Thaps_bicluster_0045
GO:0006352 transcription initiation 0.0601545 1 Thaps_bicluster_0045
GO:0008643 carbohydrate transport 0.0646355 1 Thaps_bicluster_0045
GO:0006811 ion transport 0.0823561 1 Thaps_bicluster_0045
GO:0006412 protein biosynthesis 0.185789 1 Thaps_bicluster_0045
GO:0007018 microtubule-based movement 0.186045 1 Thaps_bicluster_0045
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