260899 (RPN) SAC3_GANP
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260899 chr_1 (RPN) SAC3_GANP 1191973 1192861 - SAC3_GANP

Synonyms

NCBI ID Ensembl Genomes exon ID
7451495 Thaps260899.2, Thaps260899.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0368

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0045
 0.44

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9439

26991

GRX_GRXh_1_2_like
0.8732

11479

hypothetical protein
0.8609

36669

TPT
0.8589

31829

CBS_like
0.8587

268592

VDE superfamily
0.8459

3071

NA
0.8438

28125

PLN00203
0.839

2441

Thymidylate_kin
0.8386

37585

MECDP_synthase
0.8379

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PCI_Csn8 superfamily COP9 signalosome, subunit CSN8; This PCI_Csn8 domain is conserved from plants to humans. It is a... - 100.04 4.89E-26 104 - 233 superfamily 255736
PCI_Csn8 superfamily COP9 signalosome, subunit CSN8; This PCI_Csn8 domain is conserved from plants to humans. It is a... - 100.04 4.89E-26 104 - 233 superfamily 255736
SAC3_GANP SAC3/GANP/Nin1/mts3/eIF-3 p25 family; This large family includes diverse proteins involved in large... - 108.546 1.39E-28 58 - 205 multi-dom 251923

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20434 PHATRDRAFT_20434 213363 225386 449934 Cre17.g708300.t1.2 AT1G64520.1 362255

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0005838 GO:0006508 -

GO:0005838

proteasome regulatory particle

Details: 
A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex.
GO Category: 
CC

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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