Thaps_bicluster_0263 Residual: 0.34
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0263 0.34 Thalassiosira pseudonana
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Displaying 1 - 28 of 28
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1040 hypothetical protein

1040 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1040
10907 hypothetical protein

10907 - hypothetical protein

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

10907
11486 hypothetical protein

11486 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11486
17349 SPFH_prohibitin

17349 - SPFH_prohibitin

GO Terms:

NA

CD Domains:

Go To Gene Page:

17349
17961 BI-1-like superfamily

17961 - BI-1-like superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

17961
18503 PDI_a_family

18503 - PDI_a_family

GO Terms:

GO:0005489, GO:0006118, GO:0003756

CD Domains:

Go To Gene Page:

18503
20892 hypothetical protein

20892 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20892
20993 hslU

20993 - hslU

GO Terms:

GO:0000166, GO:0017111, GO:0005515, GO:0005524, GO:0005737, GO:0009376, GO:0009377, GO:0016887

CD Domains:

Go To Gene Page:

20993
21341 hypothetical protein

21341 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21341
21965 PDI_a_ERp38

21965 - PDI_a_ERp38

GO Terms:

GO:0005489, GO:0006118, GO:0003756

CD Domains:

Go To Gene Page:

21965
22097 hypothetical protein

22097 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22097
23126 hypothetical protein

23126 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23126
25127 hypothetical protein

25127 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25127
25128 Thioredoxin_like superfamily

25128 - Thioredoxin_like superfamily

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

25128
263154 (Tp_HSF_3.8b) HSF_DNA-bind superfamily

263154 - (Tp_HSF_3.8b) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

263154
263182 DUF1350 superfamily

263182 - DUF1350 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

263182
268059 hypothetical protein

268059 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268059
268157 DnaJ

268157 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

268157
29506 cpn10

29506 - cpn10

GO Terms:

GO:0005524, GO:0006457

CD Domains:

Go To Gene Page:

29506
32459 PspA

32459 - PspA

GO Terms:

NA

CD Domains:

Go To Gene Page:

32459
35031 Evr1_Alr superfamily

35031 - Evr1_Alr superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

35031
39038 DUS_like_FMN

39038 - DUS_like_FMN

GO Terms:

GO:0008033, GO:0016491, GO:0050660, GO:0051341

CD Domains:

Go To Gene Page:

39038
39149 PRK05218

39149 - PRK05218

GO Terms:

GO:0006457, GO:0051082, GO:0005524, GO:0003763

CD Domains:

Go To Gene Page:

39149
39666 COG0523

39666 - COG0523

GO Terms:

NA

CD Domains:

Go To Gene Page:

39666
4829 hypothetical protein

4829 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4829
6809 hypothetical protein

6809 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6809
7672 Bestrophin superfamily

7672 - Bestrophin superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

7672
928 LPLAT superfamily

928 - LPLAT superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

928
GO ID Go Term p-value q-value Cluster
GO:0006457 protein folding 0.00141534 1 Thaps_bicluster_0263
GO:0006118 electron transport 0.0107831 1 Thaps_bicluster_0263
GO:0008033 tRNA processing 0.0330245 1 Thaps_bicluster_0263
GO:0051341 regulation of oxidoreductase activity 0.0420242 1 Thaps_bicluster_0263
GO:0006355 regulation of transcription, DNA-dependent 0.446038 1 Thaps_bicluster_0263
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