Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1191(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1191
|Gene||Common Name||Description||Module membership|
|GSU0102||selB||selenocysteine-specific translation elongation factor (NCBI)||335, 338|
|GSU0106||GSU0106||soj protein (VIMSS)||286, 335|
|GSU0115||pdxA||pyridoxal phosphate biosynthetic protein PdxA (NCBI)||200, 335|
|GSU0147||recX||regulatory protein RecX (NCBI)||198, 338|
|GSU0176||GSU0176||conserved hypothetical protein (VIMSS)||173, 335|
|GSU0295||cheR-1||chemotaxis protein methyltransferase CheR (NCBI)||278, 338|
|GSU0465||efp-1||translation elongation factor P (NCBI)||198, 338|
|GSU0551||GSU0551||conserved hypothetical protein (VIMSS)||173, 335|
|GSU0560||GSU0560||hypothetical protein (VIMSS)||179, 335|
|GSU0808||pleD||GGDEF domain protein (NCBI)||47, 338|
|GSU0887||GSU0887||conserved hypothetical protein (VIMSS)||144, 335|
|GSU0943||GSU0943||hypothetical protein (VIMSS)||304, 335|
|GSU0954||GSU0954||conserved hypothetical protein (VIMSS)||260, 338|
|GSU1006||GSU1006||hypothetical protein (VIMSS)||265, 335|
|GSU1112||mtaP||methylthioadenosine phosphorylase (NCBI)||68, 338|
|GSU1191||GSU1191||hypothetical protein (VIMSS)||335, 338|
|GSU1355||GSU1355||ISGsu7, transposase OrfA (VIMSS)||335, 341|
|GSU1356||GSU1356||ISGsu7, transposase OrfB (VIMSS)||47, 335|
|GSU1364||GSU1364||HNH endonuclease family protein (NCBI)||199, 338|
|GSU1366||GSU1366||hypothetical protein (VIMSS)||143, 338|
|GSU1367||GSU1367||hypothetical protein (VIMSS)||301, 338|
|GSU1368||GSU1368||hypothetical protein (VIMSS)||301, 338|
|GSU1369||GSU1369||conserved hypothetical protein (VIMSS)||68, 338|
|GSU1435||GSU1435||peptide ABC transporter, permease protein (VIMSS)||104, 338|
|GSU1475||GSU1475||RNA methyltransferase, TrmH family, group 1 (VIMSS)||124, 335|
|GSU1486||GSU1486||MttB family protein (VIMSS)||319, 338|
|GSU1487||ribF||riboflavin biosynthesis protein RibF (NCBI)||301, 338|
|GSU1494||GSU1494||sensory box histidine kinase (VIMSS)||198, 338|
|GSU1545||GSU1545||transporter, LysE family (VIMSS)||181, 338|
|GSU1609||GSU1609||outer membrane efflux protein (VIMSS)||159, 335|
|GSU1611||GSU1611||AcrB/AcrD/AcrF family protein (VIMSS)||278, 338|
|GSU1612||gpm||phosphoglycerate mutase (NCBI)||47, 338|
|GSU1674||GSU1674||hypothetical protein (VIMSS)||260, 338|
|GSU1820||GSU1820||protein-P-II uridylyltransferase, putative (VIMSS)||163, 335|
|GSU1838||hrpB||ATP-dependent helicase HrpB (NCBI)||147, 338|
|GSU1870||GSU1870||GGDEF domain protein (VIMSS)||183, 335|
|GSU1923||GSU1923||membrane protein, putative (VIMSS)||47, 338|
|GSU1940||GSU1940||sigma-54 dependent DNA-binding response regulator (VIMSS)||158, 335|
|GSU1941||GSU1941||sensor histidine kinase (VIMSS)||159, 335|
|GSU2088||GSU2088||glycosyl transferase, group 2 family protein (VIMSS)||47, 338|
|GSU2114||GSU2114||hypothetical protein (VIMSS)||278, 338|
|GSU2293||GSU2293||hypothetical protein (VIMSS)||181, 338|
|GSU2455||GSU2455||conserved hypothetical protein (VIMSS)||163, 335|
|GSU2632||GSU2632||GGDEF domain protein (NCBI)||84, 338|
|GSU2677||GSU2677||membrane protein, putative (VIMSS)||47, 338|
|GSU2693||GSU2693||response regulator (VIMSS)||71, 338|
|GSU2710||GSU2710||hypothetical protein (NCBI)||140, 335|
|GSU2717||GSU2717||conserved hypothetical protein (VIMSS)||144, 335|
|GSU3108||rho||transcription termination factor Rho (NCBI)||183, 335|
|GSU3209||GSU3209||iojap-related protein (VIMSS)||160, 335|
|GSU3282||GSU3282||siroheme synthase, N-terminal domain protein (NCBI)||260, 335|
|GSU3465||trmE||tRNA modification GTPase TrmE (NCBI)||43, 338|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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