Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2114(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2114
|Gene||Common Name||Description||Module membership|
|GSU0102||selB||selenocysteine-specific translation elongation factor (NCBI)||335, 338|
|GSU0147||recX||regulatory protein RecX (NCBI)||198, 338|
|GSU0273||GSU0273||radical SAM domain protein (NCBI)||249, 278|
|GSU0295||cheR-1||chemotaxis protein methyltransferase CheR (NCBI)||278, 338|
|GSU0314||GSU0314||general secretion protein E N-terminal domain protein (NCBI)||79, 278|
|GSU0413||fliI||flagellum-specific ATP synthase FliI (NCBI)||186, 278|
|GSU0427||GSU0427||lipoprotein, putative (VIMSS)||96, 278|
|GSU0428||GSU0428||lipoprotein, putative (VIMSS)||21, 278|
|GSU0432||GSU0432||conserved hypothetical protein (VIMSS)||96, 278|
|GSU0465||efp-1||translation elongation factor P (NCBI)||198, 338|
|GSU0512||GSU0512||conserved hypothetical protein (VIMSS)||8, 278|
|GSU0705||GSU0705||cytochrome c biogenesis protein, CcmF/CcyK/CcsA family (VIMSS)||36, 278|
|GSU0758||GSU0758||membrane protein, putative (VIMSS)||181, 278|
|GSU0759||GSU0759||hypothetical protein (VIMSS)||260, 278|
|GSU0808||pleD||GGDEF domain protein (NCBI)||47, 338|
|GSU0833||GSU0833||hypothetical protein (VIMSS)||180, 278|
|GSU0954||GSU0954||conserved hypothetical protein (VIMSS)||260, 338|
|GSU1042||GSU1042||conserved hypothetical protein (NCBI)||130, 278|
|GSU1112||mtaP||methylthioadenosine phosphorylase (NCBI)||68, 338|
|GSU1156||asnS||asparaginyl-tRNA synthetase (NCBI)||104, 278|
|GSU1164||GSU1164||ABC transporter, permease protein (VIMSS)||130, 278|
|GSU1191||GSU1191||hypothetical protein (VIMSS)||335, 338|
|GSU1281||nikO||component of nickel ABC transport system (Dmitry Rodionov)||181, 278|
|GSU1364||GSU1364||HNH endonuclease family protein (NCBI)||199, 338|
|GSU1366||GSU1366||hypothetical protein (VIMSS)||143, 338|
|GSU1367||GSU1367||hypothetical protein (VIMSS)||301, 338|
|GSU1368||GSU1368||hypothetical protein (VIMSS)||301, 338|
|GSU1369||GSU1369||conserved hypothetical protein (VIMSS)||68, 338|
|GSU1391||GSU1391||Fic family protein (NCBI)||249, 278|
|GSU1435||GSU1435||peptide ABC transporter, permease protein (VIMSS)||104, 338|
|GSU1486||GSU1486||MttB family protein (VIMSS)||319, 338|
|GSU1487||ribF||riboflavin biosynthesis protein RibF (NCBI)||301, 338|
|GSU1494||GSU1494||sensory box histidine kinase (VIMSS)||198, 338|
|GSU1545||GSU1545||transporter, LysE family (VIMSS)||181, 338|
|GSU1611||GSU1611||AcrB/AcrD/AcrF family protein (VIMSS)||278, 338|
|GSU1612||gpm||phosphoglycerate mutase (NCBI)||47, 338|
|GSU1674||GSU1674||hypothetical protein (VIMSS)||260, 338|
|GSU1838||hrpB||ATP-dependent helicase HrpB (NCBI)||147, 338|
|GSU1923||GSU1923||membrane protein, putative (VIMSS)||47, 338|
|GSU1991||GSU1991||CAAX amino terminal protease family protein (NCBI)||222, 278|
|GSU2088||GSU2088||glycosyl transferase, group 2 family protein (VIMSS)||47, 338|
|GSU2114||GSU2114||hypothetical protein (VIMSS)||278, 338|
|GSU2117||GSU2117||hypothetical protein (VIMSS)||181, 278|
|GSU2123||GSU2123||HD domain protein (NCBI)||104, 278|
|GSU2163||GSU2163||hypothetical protein (VIMSS)||181, 278|
|GSU2274||fbP-2||FKBP-type peptidyl-prolyl cis-trans isomerase (NCBI)||15, 278|
|GSU2293||GSU2293||hypothetical protein (VIMSS)||181, 338|
|GSU2295||GSU2295||hypothetical protein (VIMSS)||141, 278|
|GSU2385||GSU2385||hypothetical protein (VIMSS)||82, 278|
|GSU2402||GSU2402||hypothetical protein (VIMSS)||84, 278|
|GSU2533||GSU2533||hypothetical protein (VIMSS)||224, 278|
|GSU2632||GSU2632||GGDEF domain protein (NCBI)||84, 338|
|GSU2677||GSU2677||membrane protein, putative (VIMSS)||47, 338|
|GSU2693||GSU2693||response regulator (VIMSS)||71, 338|
|GSU2782||GSU2782||AcrB/AcrD/AcrF family protein (VIMSS)||278, 296|
|GSU3031||GSU3031||sigma-54 dependent transcriptional regulator (VIMSS)||69, 278|
|GSU3118||regX3||DNA-binding response regulator (NCBI)||253, 278|
|GSU3119||GSU3119||sensor histidine kinase (VIMSS)||180, 278|
|GSU3465||trmE||tRNA modification GTPase TrmE (NCBI)||43, 338|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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