Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2175(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2175
|Gene||Common Name||Description||Module membership|
|GSU0062||GSU0062||TraD protein, putative (VIMSS)||189, 319|
|GSU0150||argB||acetylglutamate kinase (NCBI)||107, 189|
|GSU0157||GSU0157||fibronectin type III domain protein (NCBI)||71, 222|
|GSU0206||GSU0206||ZIP zinc transporter family protein (VIMSS)||189, 206|
|GSU0231||GSU0231||hypothetical protein (VIMSS)||189, 224|
|GSU0330||GSU0330||general secretion pathway protein C, putative (NCBI)||173, 189|
|GSU0523||pabB||para-aminobenzoate synthase, component I (NCBI)||71, 104|
|GSU0691||GSU0691||translation initation factor SUI1, putative (NCBI)||71, 79|
|GSU0811||ntrX||nitrogen regulation protein NtrX (NCBI)||71, 298|
|GSU0832||GSU0832||lipoprotein, putative (VIMSS)||71, 236|
|GSU0848||GSU0848||ferredoxin family protein, putative (VIMSS)||21, 189|
|GSU0855||GSU0855||membrane protein, TerC family (NCBI)||59, 71|
|GSU0856||htpX||peptidase, M48 family (NCBI)||71, 321|
|GSU1015||GSU1015||hypothetical protein (VIMSS)||21, 189|
|GSU1035||GSU1035||methyl-accepting chemotaxis protein (NCBI)||57, 189|
|GSU1065||GSU1065||hypothetical protein (VIMSS)||173, 189|
|GSU1085||GSU1085||hypothetical protein (VIMSS)||57, 189|
|GSU1142||cheW-3||purine-binding chemotaxis protein CheW (NCBI)||189, 241|
|GSU1163||GSU1163||ABC transporter, permease protein (VIMSS)||189, 266|
|GSU1220||GSU1220||response regulator (VIMSS)||189, 336|
|GSU1395||GSU1395||hypothetical protein (VIMSS)||57, 189|
|GSU1568||GSU1568||conserved hypothetical protein (VIMSS)||71, 198|
|GSU1569||GSU1569||transcriptional regulator, CopG family (VIMSS)||71, 318|
|GSU1577||cobO||cob(I)alamin adenosyltransferase (NCBI)||189, 231|
|GSU1877||fabK||oxidoreductase, 2-nitropropane dioxygenase family (NCBI)||71, 292|
|GSU1942||GSU1942||UDP-glucose/GDP-mannose dehydrogenase family protein (VIMSS)||189, 319|
|GSU1994||GSU1994||hypothetical protein (VIMSS)||71, 268|
|GSU2013||GSU2013||phosphoglucomutase/phosphomannomutase family protein (VIMSS)||55, 189|
|GSU2041||GSU2041||sigma-54 dependent DNA-binding response regulator (VIMSS)||71, 104|
|GSU2087||gmhA||phosphoheptose isomerase (NCBI)||71, 108|
|GSU2118||GSU2118||integrative genetic element Gsu21, integrase (VIMSS)||189, 307|
|GSU2122||GSU2122||TraG family protein (VIMSS)||71, 206|
|GSU2137||GSU2137||metal ion efflux outer membrane protein family protein, putative (VIMSS)||110, 189|
|GSU2175||GSU2175||trfA-related protein (VIMSS)||71, 189|
|GSU2191||GSU2191||aldehyde ferredoxin oxidoreductase, tungsten-containing (VIMSS)||71, 206|
|GSU2297||GSU2297||sensory box histidine kinase (VIMSS)||71, 181|
|GSU2302||GSU2302||trehalose-phosphatase, putative (VIMSS)||20, 189|
|GSU2303||GSU2303||Na+/H+ antiporter family protein (VIMSS)||20, 71|
|GSU2386||GSU2386||methylcobamide:CoM methyltransferase-related protein (NCBI)||189, 266|
|GSU2393||GSU2393||ISGsu5, transposase, truncation (VIMSS)||121, 189|
|GSU2693||GSU2693||response regulator (VIMSS)||71, 338|
|GSU2719||hoxY||NAD-reducing hydrogenase, delta subunit (NCBI)||189, 224|
|GSU2769||GSU2769||metallo-beta-lactamase family protein (VIMSS)||71, 206|
|GSU2954||acr3||arsenical-resistance protein (NCBI)||71, 146|
|GSU3100||hisD||histidinol dehydrogenase (NCBI)||71, 203|
|GSU3116||GSU3116||1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (NCBI)||81, 189|
|GSU3198||cheY-7||chemotaxis protein CheY (NCBI)||189, 326|
|GSU3202||GSU3202||hypothetical protein (VIMSS)||189, 326|
|GSU3364||GSU3364||hypothetical protein (VIMSS)||81, 189|
|GSU3428||GSU3428||cytochrome c family protein, putative (NCBI)||189, 318|
|GSU3451||GSU3451||conserved hypothetical protein (VIMSS)||71, 201|
|GSU3463||gidB||glucose-inhibited division protein B (NCBI)||8, 71|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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