Organism : Halobacterium salinarum NRC-1 | Module List :
hypothetical protein VNG0168H
Functional Annotations (4)
|DNA-directed RNA polymerase activity||go/ molecular_function|
|DNA-directed RNA polymerase I activity||go/ molecular_function|
|DNA-directed RNA polymerase II activity||go/ molecular_function|
|DNA-directed RNA polymerase III activity||go/ molecular_function|
Regulation information for VNG0168H(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 2 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for VNG0168H
Module neighborhood information for VNG0168H
|Gene||Common Name||Description||Module membership|
|VNG0168H||hypothetical protein VNG0168H||244|
|VNG0174G||cat1||cationic amino acid transporter||9, 223, 244|
|VNG0654C||hypothetical protein VNG0654C||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG0656H||hypothetical protein VNG0656H||11, 73, 208, 223, 244, 273|
|VNG0737H||hypothetical protein VNG0737H||9, 244, 273|
|VNG0828H||hypothetical protein VNG0828H||9, 11, 73, 84, 125, 208, 223, 240, 244, 273, 289|
|VNG0829G||dmsA||dimethylsulfoxide reductase||9, 11, 73, 84, 125, 208, 223, 240, 244, 273, 289|
|VNG0830G||hmoA||HmoA||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG0831G||moz||molybdopterin oxidoreductase||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG0832C||hypothetical protein VNG0832C||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1039H||hypothetical protein VNG1039H||11, 73, 244, 273|
|VNG1168C||hypothetical protein VNG1168C||244|
|VNG1200H||hypothetical protein VNG1200H||9, 73, 84, 223, 244|
|VNG1458G||crtB1||phytoene synthase||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1459H||hypothetical protein VNG1459H||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1461H||hypothetical protein VNG1461H||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1462G||cdc48a||cell division cycle protein||9, 11, 73, 84, 125, 208, 223, 244, 273|
|VNG1463G||blp||bacterio-opsin linked protein||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1464G||bat||bacterio-opsin activator||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1465G||brp||bacteriorhodopsin-like protein||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1467G||bop||bacterio-opsin||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1468H||hypothetical protein VNG1468H||9, 11, 73, 84, 125, 208, 223, 244, 273, 289|
|VNG1628G||aad||aryl-alcohol dehydrogenase||11, 208, 244, 273|
|VNG1630H||hypothetical protein VNG1630H||11, 208, 244, 273|
|VNG1657H||hypothetical protein VNG1657H||11, 208, 244, 273|
|VNG1883G||nadB||L-aspartate oxidase||11, 73, 125, 208, 223, 244, 273|
|VNG1884G||nadC||hypothetical protein VNG1884G||11, 73, 125, 208, 223, 244, 273|
|VNG2137G||ggt||geranylgeranyl-diphosphate geranylgeranyltransferase||11, 208, 244, 273|
|VNG2535H||hypothetical protein VNG2535H||9, 11, 73, 125, 208, 223, 244, 273|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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