Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG2477H(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 10 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VNG2477H
|Gene||Common Name||Description||Module membership|
|VNG0249G||fbr||cytochrome-like protein||205, 226|
|VNG0408H||hypothetical protein VNG0408H||226|
|VNG0451G||phoU||hypothetical protein VNG0451G||6, 76, 124, 163, 174, 205, 226|
|VNG0452G||pstB2||phosphate ABC transporter ATP-binding protein||6, 76, 124, 163, 174, 205, 226|
|VNG0453G||pstA2||phosphate ABC transporter permease||6, 76, 124, 163, 174, 205, 226|
|VNG0455G||pstC2||phosphate ABC transporter permease||6, 76, 124, 163, 174, 205, 226|
|VNG0457G||phoX||phosphate ABC transporter periplasmic phosphate-binding protein||6, 76, 124, 163, 174, 205, 226|
|VNG0458G||prp1||phosphate regulatory protein-like protein||6, 76, 124, 163, 174, 205, 226|
|VNG0535C||hypothetical protein VNG0535C||76, 163, 174, 226|
|VNG0536G||sirR||transcription repressor||163, 174|
|VNG0745G||spoVR||hypothetical protein VNG0745G||77|
|VNG0746C||hypothetical protein VNG0746C||77|
|VNG0748G||prkA||hypothetical protein VNG0748G||77|
|VNG0749G||prk||serine protein kinase||77|
|VNG0750C||hypothetical protein VNG0750C||77, 284|
|VNG1021C||GTP cyclohydrolase III||77|
|VNG1023C||hypothetical protein VNG1023C||77|
|VNG1024C||hypothetical protein VNG1024C||77|
|VNG1025H||hypothetical protein VNG1025H||77|
|VNG1295H||hypothetical protein VNG1295H||6, 77, 163, 205, 226|
|VNG1526G||trp6||daunorubicin resistance ABC transporter ATP-binding protein||205, 226|
|VNG1562H||hypothetical protein VNG1562H||45, 114, 124, 174, 205, 227|
|VNG1564H||hypothetical protein VNG1564H||114, 124, 174, 205, 226, 227|
|VNG1632G||cbiQ||hypothetical protein VNG1632G||76, 114, 163, 174, 205, 226, 227|
|VNG1634G||cbiN||cobalt transport protein CbiN||76, 205, 226|
|VNG1635G||cbiM||cobalt transport protein CbiM||76, 163, 205, 226, 227|
|VNG1794C||hypothetical protein VNG1794C||6, 226|
|VNG1925H||hypothetical protein VNG1925H||77|
|VNG2093G||glnA||hypothetical protein VNG2093G||75, 76, 163, 174|
|VNG2342H||hypothetical protein VNG2342H||226|
|VNG2344G||oppD2||oligopeptide ABC transporter||163|
|VNG2358G||appA||oligopeptide binding protein||6, 76, 77|
|VNG2359G||appB||oligopeptide ABC permease||6, 76, 77|
|VNG2361G||appC||oligopeptide transport permease||6, 76, 77|
|VNG2363Gm||oppD1||oligopeptide ABC transporter ATP-binding protein||6, 77, 226|
|VNG2365G||appF||oligopeptide ABC transporter ATP-binding protein||6, 76, 77|
|VNG2430G||thrC1||threonine synthase||61, 77|
|VNG2477H||hypothetical protein VNG2477H||6, 77, 163, 205, 226|
|VNG2480Hm||hypothetical protein VNG2480Hm||6, 163, 205|
|VNG2482G||pstB1||phosphate ABC transporter ATP-binding protein||6, 76, 77, 163, 174, 205, 226|
|VNG2483G||pstA1||phosphate ABC transporter permease||6, 76, 77, 163, 174, 205|
|VNG2484G||pstC1||phosphate transporter permease||6, 76, 77, 163, 205|
|VNG2486G||yqgG||phosphate ABC transporter binding protein||6, 76, 77, 163|
|VNG2527G||dppD||hypothetical protein VNG2527G||77|
|VNG2529G||dppB2||hypothetical protein VNG2529G||6, 76, 77, 163, 205, 226|
|VNG2531G||dppC1||dipeptide ABC transporter permease||6, 76, 77, 163, 174, 205, 226|
|VNG2532H||hypothetical protein VNG2532H||6, 76, 77|
|VNG2616G||cxp||putative carboxypeptidase||77, 163, 174|
|VNG6262G||zurM||ABC transporter permease||6, 76, 163, 174, 205, 226, 249|
|VNG6264G||zurA||ABC transporter ATP-binding protein||6, 76, 163, 205, 226, 249|
|VNG6265G||ycdH||adhesion protein||6, 76, 163, 174, 205, 226, 249|
|VNG6277G||ugpB||glycerol-3-phosphate-binding protein||6, 76, 163, 205|
|VNG6279G||ugpA||sn-glycerol-3-phosphate transport system permease||6, 76, 163, 205, 226|
|VNG6280G||ugpE||sn-glycerol-3-phosphate transport system permease||6, 76, 163, 205, 226|
|VNG6281G||ugpC||sn-glycerol-3-phosphate transport system ATP-binding protein||6, 76, 163, 205|
|VNG6301G||aph||alkaline phosphatase||6, 77, 163, 205, 226|
|VNG6319H||hypothetical protein VNG6319H||226|
|VNG6379C||hypothetical protein VNG6379C||226|
|VNG7125||arsR||arsenical resistance operon repressor||226|
|VNG7126||arsC||arsenate reductase||205, 226|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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