Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP0157(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 2 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP0157
Module neighborhood information for MMP0157
|Gene||Common Name||Description||Module membership|
|MMP0156||30S ribosomal protein S19e||63, 79, 91|
|MMP0157||hypothetical protein MMP0157||79, 91|
|MMP0158||hypothetical protein MMP0158||18, 91|
|MMP0627||rpl34e||50S ribosomal protein L34e||18, 56, 79|
|MMP1365||50S ribosomal protein L30e||79, 91|
|MMP1366||nusA||transcription elongation factor NusA||79, 91|
|MMP1367||rps12P||30S ribosomal protein S12P||79, 91|
|MMP1368||30S ribosomal protein S7P||79, 91|
|MMP1369||aEF-2||elongation factor EF-2||79, 91|
Gene Page Help
Network representation is interactive. You can zoom in/out and move nodes/edges around. Clicking on a node will open up a window to give more details. For genes, Locus tag, organism, genomic coordinates, NCBI gene ID, whether it is transcription factor or not and any associated functional information will be shown. For regulators, number of modules are shown in addition to gene details. For motifs, e-value, consensus sequence and sequence logo will be shown. For modules, expression profile plot, motif information, functional associations and motif locations for each member of the module will be shown.
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Module Members Tab
This help page. More general help can be accessed by clicking help menu in the main navigation bar.
CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 2. Source gene
- 3. Target genes (other module members)
- 4. Interactions between source and target genes for a particular module
- 5. Module(s) that source gene and target genes belong to
- 6. Visualisation legend