Publications

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A
Adams KN, Verma AKumar, Gopalaswamy R, et al. "Diverse Clinical Isolates of Mycobacterium tuberculosis Develop Macrophage-Induced Rifampin Tolerance." The Journal of Infectious Diseases. 2019;219:1554-1558.
Andersen P, Urdahl KB. "TB vaccines; promoting rapid and durable protection in the lung." Curr. Opin. Immunol.. 2015;35:55-62.
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Banaei-Esfahani A, Nicod C, Aebersold R, Collins BC. "Systems proteomics approaches to study bacterial pathogens: application to Mycobacterium tuberculosis." Curr. Opin. Microbiol.. 2017;39:64-72.
Boot M, van Winden VJC, Sparrius M, et al. "Cell envelope stress in mycobacteria is regulated by the novel signal transduction ATPase IniR in response to trehalose." PLoS Genet.. 2017;13(12):e1007131.
C
Cohen SB, Gern BH, Delahaye JL, et al. "Alveolar Macrophages Provide an Early Mycobacterium tuberculosis Niche and Initiate Dissemination." Cell Host Microbe. 2018;24(3):439-446.e4.
Cohen SB, Urdahl KB. "Going beyond gamma for TB protection." Nat Microbiol. 2018;3(11):1194-1195.
D
Delahaye JL, Gern BH, Cohen SB, et al. "Cutting Edge: Bacillus Calmette–Guérin–Induced T Cells Shape Mycobacterium tuberculosis Infection before Reducing the Bacterial Burden." The Journal of Immunology. 2019;203:807-812.
Delahaye JL, Gern BH, Cohen SB, et al. "BCG-induced T cells shape Mycobacterium tuberculosis infection before reducing the bacterial burden." bioRxiv. 2019.
Di Paolo NC, Shafiani S, Day T, et al. "Interdependence between Interleukin-1 and Tumor Necrosis Factor Regulates TNF-Dependent Control of Mycobacterium tuberculosis Infection." Immunity. 2015;43(6):1125-36.
Duffy FJ, Weiner J, Hansen S, et al. "Immunometabolic Signatures Predict Risk of Progression to Active Tuberculosis and Disease Outcome." Front Immunol. 2019;10:527.
H
Hansen SG, Zak DE, Xu G, et al. "Prevention of tuberculosis in rhesus macaques by a cytomegalovirus-based vaccine." Nat. Med.. 2018;24(2):130-143.
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Levitte S, Adams KN, Berg RD, Cosma CL, Urdahl KB, Ramakrishnan L. "Mycobacterial Acid Tolerance Enables Phagolysosomal Survival and Establishment of Tuberculous Infection In Vivo." Cell Host Microbe. 2016;20(2):250-8.
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Ma S, Jaipalli S, Larkins-Ford J, et al. "Transcriptomic Signatures Predict Regulators of Drug Synergy and Clinical Regimen Efficacy against Tuberculosis." mBio. 2019;10(6).
Ma S, Morrison R, Hobbs SJ, et al. "Transcriptional regulator-induced phenotype screen reveals drug potentiators in Mycobacterium tuberculosis." Nat Microbiol. 2020.
Ma S, Minch KJ, Rustad TR, et al. "Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis." PLoS Comput. Biol.. 2015;11(11):e1004543.
Minch KJ, Rustad TR, Peterson EJR, et al. "The DNA-binding network of Mycobacterium tuberculosis." Nat Commun. 2015;6:5829.
Moguche AO, Shafiani S, Clemons C, et al. "ICOS and Bcl6-dependent pathways maintain a CD4 T cell population with memory-like properties during tuberculosis." J. Exp. Med.. 2015;212(5):715-28.
Moguche AO, Musvosvi M, Penn-Nicholson A, et al. "Antigen Availability Shapes T Cell Differentiation and Function during Tuberculosis." Cell Host Microbe. 2017;21(6):695-706.e5.
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Nemeth J, Olson GS, Rothchild AC, et al. "Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection." PLoS Pathog. 2020;16(7):e1008655.
Nicod C, Banaei-Esfahani A, Collins BC. "Elucidation of host-pathogen protein-protein interactions to uncover mechanisms of host cell rewiring." Curr. Opin. Microbiol.. 2017;39:7-15.
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Peters JS, Ismail N, Dippenaar A, et al. "Genetic Diversity in Clinical Isolates and Resulting Outcomes of Tuberculosis Infection and Disease." Annu Rev Genet. 2020.
Peterson EJR, Ma S, Sherman DR, Baliga NS. "Network analysis identifies Rv0324 and Rv0880 as regulators of bedaquiline tolerance in Mycobacterium tuberculosis." Nat Microbiol. 2016;1(8):16078.
Peterson EJR, Reiss DJ, Turkarslan S, et al. "A high-resolution network model for global gene regulation in Mycobacterium tuberculosis." Nucleic Acids Res.. 2014;42(18):11291-303.
Peterson, JR E, Bailo R, Rothchild AC, et al. "Path-seq identifies an essential mycolate remodeling program for mycobacterial host adaptation." Molecular Systems Biology. 2019;15:e8584.
Peterson EJR, Abidi AA, Arrieta-Ortiz ML, et al. "Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis." Cell Rep. 2020;31(4):107577.