New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 2070640 =32 (0.150)9 (0.040) 4/198 30.4 0.20 intergenic (+55/+117) dcd/guaB deoxycytidine triphosphate deaminase/inosine‑5'‑monophosphate dehydrogenase
?NC_014034 2330295 = 39 (0.180)intergenic (+270/+42) RCAP_rcc02161/mrcA hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

CACAAGGGCCGGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGC...................  <  NC_014034/2070739‑2070640
....................................................................................................GGCCCCCGGCGGGTCGCCG  >  NC_014034/2330295‑2330313
                                                                                                                       
CACAAGGGCCGGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCG                    >  1:188254/1‑101 (MQ=1)
CACAAGGGCCGGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCG                    >  2:763669/1‑101 (MQ=1)
         CGGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGC           >  1:1021121/1‑101 (MQ=11)
         CGGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGC           >  2:3603934/1‑101 (MQ=11)
         CGGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGC           >  2:434607/1‑101 (MQ=11)
          GGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGCG          >  1:2042506/1‑101 (MQ=1)
          GGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGCG          >  2:3220148/1‑101 (MQ=1)
             GGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGCGGGg       >  1:1627902/1‑100 (MQ=14)
               AAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGCGGGggg     >  2:1132203/1‑98 (MQ=9)
               AAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGCGGGggg     >  2:3963851/1‑98 (MQ=9)
                  CCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGCGCCCCCCGGCGGGGCGCCG  >  1:2240803/1‑101 (MQ=19)
                                                                                                                       
CACAAGGGCCGGGGGAAACCCCGGCCCTTTTTCTGTGTACCGGCAAACACCGCTTCCCCTTCATCTTGCCGAAAATATCCCGGGGGGTCCGGGGGGCAGC...................  <  NC_014034/2070739‑2070640
....................................................................................................GGCCCCCGGCGGGTCGCCG  >  NC_014034/2330295‑2330313

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG