New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2070640 =	32 (0.150)	9 (0.040)	4/198	30.4	0.20	intergenic (+55/+117)	dcd/guaB	deoxycytidine triphosphate deaminase/inosine‑5'‑monophosphate dehydrogenase
	?	NC_014034	2330295 =	39 (0.180)					intergenic (+270/+42)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

TATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGG..G....G.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCA  >  NC_014034/2330195‑2330389                                                                                                       |                                                                                                           tATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..g                                                                                                            <  1:714198/101‑1 (MQ=255) tATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..g                                                                                                            >  1:1901/1‑101 (MQ=255)   tttGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcg                                                                                                          >  1:374631/1‑99 (MQ=255)     tGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcgga                                                                                                        <  2:2991344/101‑5 (MQ=255)        gcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcggagcc                                                                                                     <  2:122333/101‑8 (MQ=255)        gcCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcggagcc                                                                                                     <  1:2551832/101‑8 (MQ=255)          cAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcggagcccc                                                                                                   >  2:957855/1‑92 (MQ=38)          cAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcggagcccc                                                                                                   >  1:1322437/1‑92 (MQ=38)          cAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGT.CCGGG..G....G.....cggagcccc                                                                                         <  1:75361/101‑9 (MQ=38)           aaGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGAtcccgggggtccgggg..gcggagccccc                                                                                                  >  1:815853/1‑91 (MQ=38)            aGAAAACGCCGGGGCGCGCGTGCGGGGCCCCGGATCACCGGCGGCCCGGGCGTCTTTCACCTGGGGCCAAAGATCCCGGGGGT.CCGGG..G....G.....cggagcccccg                                                                                       <  1:1102860/101‑11 (MQ=25)                    ccGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCg                                                                                   <  1:1947808/101‑1 (MQ=25)                      ggggCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGcc                                                                                 >  1:2556730/1‑101 (MQ=25)                         gcgggcATGCGGGGCCCCGGAGCCCCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAg                                                                              <  1:633093/101‑1 (MQ=18)                         gcgcgcATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAg                                                                              <  2:1812091/101‑1 (MQ=25)                           gcgcATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGc                                                                            <  2:2760031/101‑1 (MQ=25)                            cgcATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGCGGcc                                                                           >  2:257504/1‑100 (MQ=21)                              cATGCGGGGCCCGGGATCCCCGGCGGCCGGGGCGGCTTTCACCGGGGGCAAAAGATCCCGGGGGTCCGGGG..GGGGAG.....CCCCCGGC.GGGTCGCCGAGGCATc                                                                         <  2:2188654/101‑1 (MQ=18)                               aTGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTGGcccgggcgggc                                                                        >  1:358864/1‑92 (MQ=18)                               aTGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGGGCCGCGGGATCg                                                                        >  1:1809229/1‑101 (MQ=21)                                 gCGGGGCCCCGGATCCCCGGCGGCCGGGGCGGCTTTCACCGGGGGCCAAAGACCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGcc                                                                      <  2:2556539/101‑1 (MQ=18)                                   ggggCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTc                                                                    <  2:261005/101‑1 (MQ=25)                                   ggggCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGGGCCGCGGCGTCGcccc                                                                    >  1:617489/1‑99 (MQ=18)                                       ccccGGATCCCCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.g                                                              <  2:3004245/101‑1 (MQ=21)                                           ggATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAAt                                                          <  2:3473194/101‑1 (MQ=25)                                               cACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGGGGGGGCGCCTCG.GC.GAGAAcccc                                                      >  2:3928336/1‑100 (MQ=12)                                                ccgggcggcCGGGGCGTCTTCCCCGGGGGGCAAAAGCCCCGGGGGGTCCGGGGGCG....GCC...CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCtt                                                     <  2:1809110/98‑1 (MQ=9)                                                ccgggcggcCGGGGCGGTTTCCACCGGGGGCAAAAGACCCGGGGGGCCGGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCtt                                                     <  1:1485843/98‑1 (MQ=12)                                                  cggcggCCCGGGCGGTTTCCCCCGGGGGCCAAAGA.CCCGGGGGGCCCGGG..G....GCGGGCCCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAg                                                   <  1:3568247/101‑1 (MQ=16)                                                   ggcggcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCCGGGCAGCGCCGCC.GCGGAAAACCCtttg                                                   >  2:1297074/1‑99 (MQ=9)                                                     cggcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGGGGCGGCGCCCCGCCC.GAAACCCCttctaa                                                 >  1:4125875/1‑97 (MQ=9)                                                      ggcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGAGGGACCGCCCCT.GC.GCAAACCCCTTGTaaa                                               >  2:3225069/1‑101 (MQ=9)                                                      ggcCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCCCGGCCGCCCCCCG.GC.CGAAACCCCTAGTaaa                                               >  1:3929461/1‑101 (MQ=2)                                                         ccGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGACGGATCCCCCCG.GCGGAAAACCCtacgaaaaca                                             >  2:4217125/1‑92 (MQ=9)                                                          cGGGCGGCTTTCCCCGGGGCCCAAAGTCCCGGGGGGTCCGGGG..GGGGCG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAAAGAcc                                           <  2:374580/101‑1 (MQ=16)                                                          cGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAAAGAcc                                           <  2:3459546/101‑1 (MQ=25)                                                           gggCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGCGGCAACGCCCCG.GG.GAAAACCCCTatgaaaaacac                                          >  2:3891299/1‑91 (MQ=9)                                                             gcggcTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGGGGGGTCGCCCCC.GC.GGCAACCCTTTGTAAAAAccgcc                                        >  1:1889128/1‑101 (MQ=9)                                                               ggcTTCCCCCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAAAGAccgcccg                                      <  2:3780415/101‑1 (MQ=21)                                                                gcTTTCACCGGGGGCCAAAGACCCCGGGGGTCGGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAAAGAccgcccgc                                     <  2:3005977/101‑1 (MQ=21)                                                                 cTTTCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGGGGGATCGCCCCC.GCGGAAAACCCTT.GTAAAAACCCCCcccg                                    >  1:1474315/1‑101 (MQ=2)                                                                  tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGGCGAGGGGTCGCCCCC.GC.GGAATCCCCCATTAAAAAACGCCCCCgg                                   >  1:792814/1‑101 (MQ=2)                                                                  tttCACCTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGGGGGATCGCCCCG.GC.GAAAACCCCTAGTAAAAAacgccccccg                                   >  1:2307711/1‑97 (MQ=9)                                                                    tCACCTGGGGCCAAAGAGCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAAAGACCGCCCGCGGAc                                 <  2:2454810/101‑1 (MQ=21)                                                                        cTGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGGGGCCCCGCCTCC.GC.GAAATCCCCTTTTAAAAAACCCCCGCCGCCAggg                             >  1:1403811/1‑101 (MQ=0)                                                                         tGGGGCCAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGCGGGGGCGCC.AGGCCGCGCCCCC.GC.GCAAACCCTTCCTTAAAAACGCCCCCGGGCAGGGa                            >  1:557496/1‑101 (MQ=2)                                                                              ccAAAGATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGa                       <  2:1522890/101‑1 (MQ=21)                                                                                   gATCCCGGGGGTCCGGGG..GCGGAG.....CCCCCGGC.GGGGCGCCGGGGCATCGCCTCG.GC.GAAAACCCTTAGTAAAAACCGCCCGCGGGCAGGGGGCCGAAgggc                  >  2:183346/1‑99 (MQ=12)                                                                                                 gcgcgtg....g.....CCCCGGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAACGGCCGCCCGCGGACAGGGACCCTAAGGTCGCTTTCTTGGGGATCa  <  2:1111228/95‑1 (MQ=255)                                                                                                       |                                                                                                           TATTTGCGCCAAGAAAAAGCCGGGGCGCGCATGCGGGGCCCCGGATCACCGGCGGCCCGGGCGGCTTTCACCTGGGGCCAAAGATCCCGGGGGTCCCGGG..G....G.....CCCCCGGC.GGGTCGCCGAGGCATCGCCTCG.GC.GAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCA  >  NC_014034/2330195‑2330389 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG