New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2070640 =	32 (0.150)	9 (0.040)	4/198	30.4	0.20	intergenic (+55/+117)	dcd/guaB	deoxycytidine triphosphate deaminase/inosine‑5'‑monophosphate dehydrogenase
	?	NC_014034	2330295 =	39 (0.180)					intergenic (+270/+42)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GGGCCAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTG  >  NC_014034/2070543‑2070739                                                                                                      |                                                                                                     gggCCAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.CCGGgcgggc                                                                                                   >  1:827624/1‑98 (MQ=255)    ccgggggCGGAGGCTCGCCAAGCTTTCCCGCGGGGGGGGGGGGG.CGCGGGGATGGTTTCCGCCGCGGCTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGcc                                                                                                 <  2:1056688/98‑1 (MQ=255)     cAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCCGGGGGGCGCTGccc                                                                                                >  1:1070549/1‑101 (MQ=255)         gccTGAAGCCCGCCAAGCTTTCCGGGGGGGGGGGGGGGG.CGCGGGGTGGGTTTCCGCCGCGGTTTG.CCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCg                                                                                            <  2:1028199/99‑1 (MQ=255)          gCTGACGCCCGCCACGCTTTCCCGGGGGGGGGGGGGGG.CGGGGGGGGGGTTTCCGCCGGGTTTTT.GCCTGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCgg                                                                                           <  2:4031710/101‑1 (MQ=255)             gacgccccccAGGCTTTCCCGGGGGGGGGGGGGGG.CGGGGGGAGGGTTTTCGCGGGGGTTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGAcc                                                                                        <  1:590753/93‑1 (MQ=255)                 cccGCCAAGCTTTCCGGGGGGGGGGGGGGGG.CGGGCGGTTGCTTTCCGCCG.GGTTTT.TCCCGCGGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGAcccccc                                                                                    <  2:2136990/99‑1 (MQ=2)                  ccGCCAAGCTTTGCCGGGGGGGGGGGGGGG.CGGGGGGATGGTTTCCGCGGCTGTTTT.CCCTGC.GCCACCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCg                                                                                   <  2:3941462/100‑1 (MQ=9)                    cccAAGCTTTTCCGGGGGGGGGGGGGGG.GGCGGGGAGGTTTTCCGCCGCGGTTTC.CCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCggg                                                                                 <  1:3070898/100‑1 (MQ=12)                      cAAGCCTTTCGGGGGGGGGGGGGGGG.CGCGCGGGGGGTTTCCCCCGCGGTTTT.CCCTGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                               <  1:3403679/101‑1 (MQ=16)                       caGCCTTTCCGGGGGGGGGGGGGGGCCCCGGGGATGGTTTCCGCCGGGCTTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                               <  2:17531/100‑1 (MQ=12)                           gttcccggggggggTGGGGGG.CGGGGGGTTGGTTCCCCCCGGGGTTTT.GCCCGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATAtttt                                                                          <  2:827543/91‑1 (MQ=9)                            tttCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCCGGGGGGGGCGGCCCCCCCGCCCCCCCCGGGCAttttt                                                                         >  2:2042368/1‑100 (MQ=25)                                gggggggggGGGGGGG.GGCGCGGGTTGTTTCCGCCGGGTTTTT.GCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCa                                                                     <  1:122586/96‑1 (MQ=9)                                  ggcgGGGGGGGGGG.CGCGCGTATGGTTCCCGCCGCGTCTTG.GCCGGC.GCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAg                                                                   <  2:112545/100‑1 (MQ=12)                                      gggggggggg.GGCGCGGTTGGTTTCCGCCGCGGCTTG.CCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGa                                                               <  1:2963998/95‑1 (MQ=12)                                                ggggcggggtgggtTTCCCCGGCGCTTTGGCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAg                                                       <  1:2538679/92‑1 (MQ=12)                                                   cgcgGGTGGTTTCCGCCGCGGTTTC.GCGGGC.GCCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGgt                                                   <  2:439803/101‑1 (MQ=17)                                                        ttggttTCCGCCGCGGCTTG.CCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTg                                              <  2:513793/100‑1 (MQ=18)                                                         ttgttctCGCCGGGGCTTC.GCCGGC.GCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTCGc                                             <  1:804434/95‑1 (MQ=17)                                                         tggttccccccgcGTCTTC.GCCTGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGc                                             <  1:804435/92‑1 (MQ=18)                                                           gttccccccgcGTCTTC.GCCCGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCg                                           <  1:1263605/94‑1 (MQ=21)                                                                     cttcTTT.GCCTGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.aa                                <  2:3737758/98‑1 (MQ=25)                                                                              ccggc.ggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGcc                        <  1:121700/98‑1 (MQ=25)                                                                              cccgc.ggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGcc                        <  2:1728311/98‑1 (MQ=25)                                                                                cgcgccccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCg                       <  1:2995924/92‑1 (MQ=25)                                                                                  c.ggcgCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCgggg                    <  1:2240803/101‑1 (MQ=255)                                                                                      ccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGttt                 <  2:1132203/98‑1 (MQ=255)                                                                                      ccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGttt                 <  2:3963851/98‑1 (MQ=255)                                                                                        ccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTcc               <  1:1627902/100‑1 (MQ=255)                                                                                           cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTccccc            <  2:3220148/96‑1 (MQ=255)                                                                                           cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTccccc            <  1:2042506/96‑1 (MQ=255)                                                                                            gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg           <  2:3603934/97‑1 (MQ=255)                                                                                            gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg           <  2:434607/97‑1 (MQ=255)                                                                                            gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg           <  1:1021121/97‑1 (MQ=255)                                                                                                gggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGccc       <  1:1096821/101‑1 (MQ=255)                                                                                                gggggCGCTGCCCCCCCGGCCCCCCGGGAAATTTTCGGCAAGATGAAAGGGGAGCGGCGTTTTCCGGGGCACAGAAAAAAGGGGCGGGGTTCccccagacc        >  2:3971646/1‑96 (MQ=9)                                                                                                 ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTGTCCCCCGGCCCt      >  1:4075478/1‑101 (MQ=255)                                                                                                 ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGGTTCCCCCGGCCCt      >  1:1621999/1‑101 (MQ=255)                                                                                                    gcgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgt   <  2:3005702/101‑1 (MQ=255)                                                                                                     cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg  <  1:188254/101‑1 (MQ=255)                                                                                                     cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg  <  2:763669/101‑1 (MQ=255)                                                                                                      |                                                                                                     GGGCCAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTG  >  NC_014034/2070543‑2070739 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG