New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193628	5 (0.030)	10 (0.060)	3/136	30.0	0.43	intergenic (+93/‑158)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 2474931	22 (0.090)					intergenic (‑94/+32)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

ACCGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC.....................................................................................................  >  NC_014034/1193500‑1193628 ....................................................................................................TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTGCGCCCCCCCGCACCCCCCGCCTTGCGTATTTGGCCAAGGAAAAGCCGGGCCGTTCGGGTGGGGGGGGCCGCGGTTTCCTGTCACCTTGGGGG  <  NC_014034/2474931‑2474831                                                                                                                                                                                                                                                                     GGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCG                                                                                                      <  1:4450781/101‑1 (MQ=1)                              GGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCG                                                                                                      <  1:4593993/101‑1 (MQ=1)                                   GAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGG                                                                                                 <  1:712576/101‑1 (MQ=1)                                     GCCGGTTGCAAAAGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCT                                                                                               <  2:3968196/101‑1 (MQ=0)                                      CCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGggc                                                                                              >  1:3980567/1‑98 (MQ=1)                                      CCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTc                                                                                              <  2:2480362/101‑2 (MQ=11)                                          TTTCAAAAGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCC                                                                                          <  1:2872118/101‑1 (MQ=17)                                            TCAAAAGATCAGGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCC                                                                                        <  1:1937795/101‑1 (MQ=17)                                            TCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTGCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCC                                                                                        <  2:4648322/101‑1 (MQ=17)                                                   ATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCG.CCCCCCGCACC                                                                                <  2:2997864/101‑1 (MQ=32)                                                     cagGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCG.CCCCCCGCACCCC                                                                              <  2:2264610/98‑1 (MQ=17)                                                     CACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGGGGCGACCCGCGGGGGGCTCCG.CCCCCCGCACCCC                                                                              <  2:3018585/101‑1 (MQ=17)                                                                                                                                                                                                                                        ACCGATCTGGTCGAGGCGCTGAAGAAAGCGGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC.....................................................................................................  >  NC_014034/1193500‑1193628 ....................................................................................................TCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTGCGCCCCCCCGCACCCCCCGCCTTGCGTATTTGGCCAAGGAAAAGCCGGGCCGTTCGGGTGGGGGGGGCCGCGGTTTCCTGTCACCTTGGGGG  <  NC_014034/2474931‑2474831 Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 15 ≤  ATCG  < 25 ≤  ATCG  < 37 ≤  ATCG