New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193628	5 (0.030)	10 (0.060)	3/136	30.0	0.43	intergenic (+93/‑158)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 2474931	22 (0.090)					intergenic (‑94/+32)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

GGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGC  >  NC_014034/1193529‑1193694                                                                                                      |                                                                      ggTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgc...g                                                                   <  1:4593993/101‑1 (MQ=255) ggTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgc...g                                                                   <  1:4450781/101‑1 (MQ=255)     tGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCcgccgcgt                                                                  >  2:4159425/1‑96 (MQ=255)      gAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                              <  1:712576/101‑4 (MQ=255)       aGCCGGTTTCAAAAGATCAAGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCAGAGGCGACCcgcccgccgg                                                                >  1:4616966/1‑94 (MQ=38)        gCCGGTTGCAAAAGATCGCGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggct                                                            <  2:3968196/101‑6 (MQ=255)         ccGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggggc                                                           >  1:3980567/1‑95 (MQ=255)         ccGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctc                                                           <  2:2480362/101‑7 (MQ=255)          cGGTTTCAAAAGATCAGGGGGAAGGGGG.CTT.GGGCCCCTTTTTTAATGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                          <  1:1385114/101‑8 (MQ=25)          cGGTTAAAAAAGATCAGGGGGAGGGGGG.CTT.CGCCCCCTTTTTTCATGGGTTGCAGGATTTTTCGCCTGGGGCAACCCCGAGGCGACCCGC...ggggggctcc                                                          <  1:1577071/101‑8 (MQ=21)             tttCAAAAGATCAGGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctccgcc                                                       <  1:2872118/101‑11 (MQ=37)                      aTCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcc                                                 <  2:2997864/101‑1 (MQ=21)                        cagggggAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                               <  2:2264610/98‑1 (MQ=21)                        cACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGGGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                               <  2:3018585/101‑1 (MQ=21)                          gggggAAAGGGC.CTTGCGCCCCCCTTTTCCCTGCGTTCGAGGATATTCCCCCCGGGGCAGCCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCAccccc                                              <  1:2351965/100‑1 (MQ=2)                           ggggAGGGGGG.CTG.CGGCCCCCTTTTTCGTGCGTTGCAGGATATTTCGCCTCGGGCAGGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCg                                            <  1:2098958/101‑1 (MQ=17)                             ggAAGGGGGCCTT.CGCCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCCCGGGCAGGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCgg                                           <  2:2124239/101‑1 (MQ=14)                                                 cttttttCTTGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGaaaa                        <  2:4616665/99‑1 (MQ=11)                                                   tttttCATGGTTTGCAGGATTTTCCGCCTGGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAgc                      <  1:931851/101‑1 (MQ=11)                                                        ctgggtttGCAGGATTTTCCGCCGCGGCCAGCCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAg                 <  2:3202646/95‑1 (MQ=11)                                                               tgaaGGATTTTTCGCCTGGGGCAGGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGa          <  2:3733984/98‑1 (MQ=11)                                                                       tttgccccgcGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTcgc  <  1:4159713/92‑1 (MQ=14)                                                                                                      |                                                                      GGTCTGAGCCGGTTTCAAAAGATCACGGGGAAGGGGG.CTT.CGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGC  >  NC_014034/1193529‑1193694 Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 39 ≤  ATCG